Protein Info for OH686_05265 in Pseudomonas sp. S08-1

Annotation: Uncharacterized MFS-type transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 159 transmembrane" amino acids 6 to 25 (20 residues), see Phobius details amino acids 37 to 53 (17 residues), see Phobius details amino acids 59 to 76 (18 residues), see Phobius details amino acids 86 to 106 (21 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 66% identity to pau:PA14_47350)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (159 amino acids)

>OH686_05265 Uncharacterized MFS-type transporter (Pseudomonas sp. S08-1)
MTEQDYLLAWGIYAISALGCLLVWFRMTGWMWRWLREPLRVIVAVLLLTPTIVDPAKELF
APAIAITALDLLFEVGKNAWRAVADLAIYGLIALGVWLAIAFLRWPLERWWENRRGPRAA
AVEEDEPTLRELMDREERPDADTRLDAYGDRRLRIEPRL