Protein Info for OH686_04615 in Pseudomonas sp. S08-1

Annotation: Branched-chain amino acid ABC transporter, permease protein LivM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 419 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 41 to 61 (21 residues), see Phobius details amino acids 93 to 110 (18 residues), see Phobius details amino acids 117 to 136 (20 residues), see Phobius details amino acids 140 to 159 (20 residues), see Phobius details amino acids 165 to 187 (23 residues), see Phobius details amino acids 196 to 212 (17 residues), see Phobius details amino acids 264 to 282 (19 residues), see Phobius details amino acids 313 to 334 (22 residues), see Phobius details amino acids 350 to 377 (28 residues), see Phobius details amino acids 388 to 405 (18 residues), see Phobius details PF11862: DUF3382" amino acids 4 to 106 (103 residues), 73.5 bits, see alignment E=1.3e-24 PF02653: BPD_transp_2" amino acids 115 to 400 (286 residues), 192 bits, see alignment E=1.1e-60

Best Hits

Swiss-Prot: 84% identical to BRAE_PSEAE: High-affinity branched-chain amino acid transport system permease protein BraE (braE) from Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)

KEGG orthology group: K01998, branched-chain amino acid transport system permease protein (inferred from 87% identity to psa:PST_2984)

Predicted SEED Role

"Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (419 amino acids)

>OH686_04615 Branched-chain amino acid ABC transporter, permease protein LivM (Pseudomonas sp. S08-1)
MMTKNLKTAFFSALLVLAVAYPVLGLKLTTVGIKLEVHGASPAVLWTIAAVAVFMFFWQL
FRDRLSAAWASAPSVPKLPASASNFLTLPSTQRWIILGLVVVALAWPFFGSRGAVDIATL
ILIYVMLGLGLNIVVGLAGLLDLGYVGFYAVGAYSYALLSHYYGLGFWICLPIAGLMAAF
FGFILGFPVLRLRGDYLAIVTLGFGEIIRILLRNMTELTGGPNGISNIDKPTLFGLSFER
RAAEGMQTFHEFFGVAYNSINKVIFLYLIALLLVLLTLFVINRLLRMPIGRAWEALREDE
IACRALGMNPTVIKLSAFTLGACFAGFAGSFFAARQGLVTPESFTFIESAIILAIVVLGG
MGSQLGIILAAVVMILMPELMREFSEYRMLFFGALMVLMMIWRPQGLLPMQRPHLELKP