Protein Info for OH686_03875 in Pseudomonas sp. S08-1
Annotation: Similarity with glutathionylspermidine synthase , group 1
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Swiss-Prot: 46% identical to YGIC_ECO57: Putative acid--amine ligase YgiC (ygiC) from Escherichia coli O157:H7
KEGG orthology group: None (inferred from 62% identity to gpb:HDN1F_15260)MetaCyc: 46% identical to peptide--spermidine ligase YgiC (Escherichia coli K-12 substr. MG1655)
6.3.1.-
Predicted SEED Role
"Similarity with glutathionylspermidine synthase (EC 6.3.1.8), group 1" in subsystem Glutathionylspermidine and Trypanothione (EC 6.3.1.8)
MetaCyc Pathways
- glutathionylspermidine biosynthesis (1/1 steps found)
KEGG Metabolic Maps
Isozymes
No predicted isozymesUse Curated BLAST to search for 6.3.1.8
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
Find the best match in UniProt
Protein Sequence (371 amino acids)
>OH686_03875 Similarity with glutathionylspermidine synthase , group 1 (Pseudomonas sp. S08-1) MRRIDFTPRPHWRQQCEELGFTFHSIDGTYWDESAAYELSLAQVETLEAAAEELHRLYLD AAQWVIEQRHFAPFALPPSAEQLIVDSWQRQEPALYGRFDFSWNGQGKPKLLEYNADTPT GLLEASVVQWYWLRDVLPEADQFNSLHEKLIERWRQIGHGHVHFAAIEGHEEDTGNVLYM LDVAHQAGLPTHYVPVEAIGYDEQRRIFVDQHERSIEHCFKLYPWEWLLQDEFSSHVGSS GIRFQEPAWKLLLSSKAMLPILWQRNPGHPNLLPSSFAADLPEPYVRKPLYAREGQNIQI VGTGQTLESDGPHAADTCIYQAYAPLPRFADSYTVLGCWMVGDQTAGLGIREDATPITRD SSRFLPHYFIE