Protein Info for OH686_03525 in Pseudomonas sp. S08-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 258 transmembrane" amino acids 12 to 39 (28 residues), see Phobius details amino acids 51 to 72 (22 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 108 to 125 (18 residues), see Phobius details amino acids 152 to 174 (23 residues), see Phobius details amino acids 194 to 224 (31 residues), see Phobius details amino acids 236 to 254 (19 residues), see Phobius details PF01925: TauE" amino acids 17 to 252 (236 residues), 162.8 bits, see alignment E=5.8e-52

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 82% identity to pmy:Pmen_2072)

Predicted SEED Role

"FIG011065: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (258 amino acids)

>OH686_03525 hypothetical protein (Pseudomonas sp. S08-1)
MPFPFELGVDPTTLLILAIVAFTAGFIDAIAGGGGLLTIPALLTAGLPPHLVLGTNKLCA
TFGSATASYTFYRRKLFAPRQWRNALIATAIGAAIGAIIAHWLPAAWLNQMLPAVVFGCG
LYLLFGKTPETHGQQDAPVAQGRQWPQGLGLGFYDGVAGPGTGAFWTVSTLLLYPMDLVR
ASGVARSMNFVSNAMALTVFIIAGQVAWLLGISMGLALMAGAFFGARTAIRGGSKFIRPV
FLLVVLALTARLAWQHWF