Protein Info for OH686_03050 in Pseudomonas sp. S08-1

Annotation: Outer membrane low permeability porin, OprD family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details PF03573: OprD" amino acids 28 to 421 (394 residues), 532.5 bits, see alignment E=3.5e-164

Best Hits

KEGG orthology group: None (inferred from 73% identity to pae:PA3038)

Predicted SEED Role

"Tricarboxylate porin OpdH"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (423 amino acids)

>OH686_03050 Outer membrane low permeability porin, OprD family (Pseudomonas sp. S08-1)
MSKSLLARGVALAALGTSLTLPTTSQAAFLEDGKASVELRNFYMNRDFRQEGAAQSKAEE
WAQGFLLRYESGYTEGTVGFGVDAIGTLGLKLDSSADESGTGLLQRDRETGRAQDDYGDL
GVTAKVKVSNSVLKAGTLMPKLPVVQANDSRLLPQSFQGGWINSQEIAGLTLDAGQLSRV
NQRDSSDHETMTLTNSSPAARGFTGLGGIDSDEFNFAGASYKWNDQLTTAYHYGALDNFY
KQHILSAVHVLPLGDKQSLKSDLRFARSTDDGDTNVDNKAFGAMFTYALGGHAFGLGYQQ
MSGDTGFAYINGTDPFLVNYVQIGDFAFKDEKSWQARYDYNFAALGIPGLTFMTRYLSGD
NVDRGAGLSEGKEWERNTDIAYVFQEGPLKNFGIKWRNATTRSNFGNDLDENRLILSYSL
SLW