Protein Info for OH686_02920 in Pseudomonas sp. S08-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 943 PF14559: TPR_19" amino acids 20 to 80 (61 residues), 28.6 bits, see alignment 1.1e-09 amino acids 347 to 397 (51 residues), 31.5 bits, see alignment 1.4e-10 PF13181: TPR_8" amino acids 45 to 75 (31 residues), 15 bits, see alignment (E = 1.7e-05) amino acids 330 to 362 (33 residues), 12.7 bits, see alignment (E = 9.4e-05) amino acids 365 to 397 (33 residues), 26.8 bits, see alignment (E = 2.8e-09) amino acids 467 to 498 (32 residues), 19.3 bits, see alignment (E = 7e-07) PF13432: TPR_16" amino acids 47 to 110 (64 residues), 31.6 bits, see alignment 1.4e-10 amino acids 273 to 328 (56 residues), 16.4 bits, see alignment 8.4e-06 amino acids 437 to 497 (61 residues), 20.5 bits, see alignment 4.4e-07 PF02810: SEC-C" amino acids 140 to 157 (18 residues), 36.9 bits, see alignment (E = 2e-12) PF12895: ANAPC3" amino acids 347 to 421 (75 residues), 28.1 bits, see alignment E=1.6e-09 PF13431: TPR_17" amino acids 352 to 384 (33 residues), 28.8 bits, see alignment (E = 6.8e-10) amino acids 420 to 453 (34 residues), 25.8 bits, see alignment (E = 6.4e-09) PF13844: Glyco_transf_41" amino acids 570 to 720 (151 residues), 93.6 bits, see alignment E=6.7e-30 amino acids 760 to 917 (158 residues), 40.6 bits, see alignment E=8.1e-14

Best Hits

Predicted SEED Role

"TPR domain protein, putative component of TonB system" in subsystem Ton and Tol transport systems

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (943 amino acids)

>OH686_02920 hypothetical protein (Pseudomonas sp. S08-1)
MDSNVQWLVGFFRAQAKLGFEEGDYTRTRNSCELVLGQSPDDEGTWLLLGDAALASKDSA
TARRCFEQLLELQPQEAEYAVSLGKSYIQLQAWESAALALRQALQISPQHAEALHMLAMV
EKMQQALQLLDDAPAVNVGRNDACPCGSGRKYKKCCLLTSTDDAMLLSLRAAMAAKEWQQ
AISLATDIQVRSLEVRRSDAMARYHLGQRRNTRPLLEVLLDELPDDAELIAALADLELDG
ESLPRVEQLARRALALDPESHLAWLVLCAFHARMGHAQEAEEGLRSLVGFAPDCRMAWER
LGSLLRKQGRGEDELSVMLDWVERCPNSHEAWFQVGFVLITLGRARDDAKIYFERALQLK
PDFHEAYCWLAQCYLDLGQSEQAQNFFLQGLQLKPDYDLGWILLGGAYQKIGRQRESEGC
LMRAIAINPHNGFAWNNLATTYLDAHELAEAEQVIRVALKLNGEHAALWNNLGIILSGAQ
RLQEAKECFAKVQELDPSFHEVRINLAGTEASYGNLDLAINYLDGLLEQSELARSNLLFF
ANYHPDWSIERIFEVYRDIAQRFYPERRYFEYSNLRTTDRRLRIGYVSPDFRQHVCSLFI
EPLLKNHQHDDFEIFAYSAVRREDEVTERYKSYVDHWRHCVGVDDEKVAEMIRADGIDIL
VDLAGHTANNRLAVFALKPAPVQVTWWMGFAYTSGLDNIDYFLSDEEMVPQGFDHVFSET
PWRMPCPAVSYQPPANLPDVTALPAQRNGYITFGTLTRPVRLNHKVIRCWSELLHRVPDS
KLMLNAPAFIDLALSDYYAGLFAEHGIARERLDIGCTSPPWPVLSSMDIALDCFPHNSGT
TLYESLWMGLPYVTLRDRPSMGRVGSLILRGLGRDEWIADSEAEYVDKLVELSSDVERLA
AIRAGLRDEMKASPLCDGVLFAGRVEDAWRGMWQRYCEQGEQQ