Protein Info for OH686_02515 in Pseudomonas sp. S08-1

Annotation: Flp pilus assembly protein TadB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 328 transmembrane" amino acids 12 to 33 (22 residues), see Phobius details amino acids 99 to 118 (20 residues), see Phobius details amino acids 124 to 143 (20 residues), see Phobius details amino acids 269 to 289 (21 residues), see Phobius details amino acids 302 to 322 (21 residues), see Phobius details PF00482: T2SSF" amino acids 161 to 285 (125 residues), 79.4 bits, see alignment E=1.2e-26

Best Hits

KEGG orthology group: K12510, tight adherence protein B (inferred from 75% identity to pba:PSEBR_a4086)

Predicted SEED Role

"Flp pilus assembly protein TadB" in subsystem Widespread colonization island

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (328 amino acids)

>OH686_02515 Flp pilus assembly protein TadB (Pseudomonas sp. S08-1)
MNQIPTEYVFAFLGMVFTAAFLLSQGVVVPVFGEAGRMRKRIRSRLHLLESANHLPNMQT
VLRQKYLKRLSPLEAGLEQLPWFEKLAQMIEQAGHDYRAYRVVLLALLLGLLVAGGTWLA
LKLWWAALILGCMAACVPFLKIASDRAQRFSAFEEGLPDALDAMCRALRAGHPFNETLRL
VAEEHKGPVAQEFGLTFADINYGNDVRRAMLGLLERMPSMTVMMLVTTILIHRESGGNLT
EVLERISALIRGRFRFQRKVKTLSAEGRMSAWVLVAIPFVLAGAIAATTPQYMPLLVKDE
FGQKLVIAAFIAMLLGVLWIRRIIRIDV