Protein Info for OH686_02460 in Pseudomonas sp. S08-1

Annotation: Glucose ABC transport system, inner membrane component 2

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 281 transmembrane" amino acids 15 to 37 (23 residues), see Phobius details amino acids 49 to 67 (19 residues), see Phobius details amino acids 79 to 99 (21 residues), see Phobius details amino acids 109 to 131 (23 residues), see Phobius details amino acids 143 to 162 (20 residues), see Phobius details amino acids 182 to 207 (26 residues), see Phobius details amino acids 249 to 271 (23 residues), see Phobius details PF00528: BPD_transp_1" amino acids 91 to 265 (175 residues), 55.2 bits, see alignment E=4.1e-19

Best Hits

KEGG orthology group: K02026, multiple sugar transport system permease protein (inferred from 93% identity to pmk:MDS_3371)

Predicted SEED Role

"Glucose ABC transport system, inner membrane component 2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (281 amino acids)

>OH686_02460 Glucose ABC transport system, inner membrane component 2 (Pseudomonas sp. S08-1)
MTSLAGKPAFSLSRAAVYATLIVACAVYLIPLLVMLLTSFKTPDDIRTGNLLSLPDVLTL
IGWVKAWDSVGGYFWNSVKIAVPAVLISTLLGALNGYVLSMWRFRGSQLFFGLLLFGCFL
PFQVVLLPASFTLGKFGLANTTAGLVLVHVVYGLAFTTLFFRNFYVSIPDALVRAARLDG
AGFFTIFGRILLPMSVPTIMVCLIWQFTQIWNDFLFGVVFASGDSQPITVALNNLVNTST
GAKEYNVDMAAAMIAGLPTLLVYVLAGKYFLRGLTAGAVKG