Protein Info for OH686_02145 in Pseudomonas sp. S08-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 signal peptide" amino acids 1 to 20 (20 residues), see Phobius details PF08238: Sel1" amino acids 294 to 324 (31 residues), 18.7 bits, see alignment (E = 1e-07) amino acids 328 to 363 (36 residues), 21.3 bits, see alignment 1.6e-08

Best Hits

Swiss-Prot: 40% identical to ALGK_PSEPK: Alginate biosynthesis protein AlgK (algK) from Pseudomonas putida (strain ATCC 47054 / DSM 6125 / NCIMB 11950 / KT2440)

KEGG orthology group: K07126, (no description) (inferred from 38% identity to ppg:PputGB1_4564)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (450 amino acids)

>OH686_02145 hypothetical protein (Pseudomonas sp. S08-1)
MLLGCSLLVGCSTPDLQLAKDAKFRGDTETAEANFLPLAELGYVDAQVGLADLLIKSPSK
EKQARGEQMYRDAMEKSPLAPTRLGKWLASKPDSSVQERNEADQLLRRGLQLGDTSTVLP
WVRVKLNGPLGAQDPEIERQLDLWQGQGIAEAQLGKILLYRARGDYQQHVAEIEQTCQRW
LAQVAECYAELAVIYRSQGRGDEQAALLERMQSEFQSGRLPPETMRDVAKALVGSDAGQP
DPEAAKGLYVAITPTFPDAWCDLAELSIRYPQLVENSEEIQAYLQKGLDAGINRAAYMLG
RLYLRGKVIPADPVAAEKYLLMSAPLEPKAHYFLGKLYAGGQLGQIQPEKALEHYLIAAR
AGDVQSDIDLARLFSDGQGVKINKVYAYSFANLAKQAGLPYGQVLIDRLAPSMNSAEIAK
ALELSQGEMRARGDEQVSATLKTNSTQGML