Protein Info for OH686_01670 in Pseudomonas sp. S08-1

Annotation: Lysine exporter protein LysE/YggA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 215 signal peptide" amino acids 1 to 28 (28 residues), see Phobius details transmembrane" amino acids 47 to 67 (21 residues), see Phobius details amino acids 74 to 85 (12 residues), see Phobius details amino acids 124 to 143 (20 residues), see Phobius details amino acids 156 to 177 (22 residues), see Phobius details amino acids 197 to 213 (17 residues), see Phobius details PF01810: LysE" amino acids 16 to 208 (193 residues), 108.3 bits, see alignment E=1.7e-35

Best Hits

KEGG orthology group: None (inferred from 68% identity to pfv:Psefu_2537)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (215 amino acids)

>OH686_01670 Lysine exporter protein LysE/YggA (Pseudomonas sp. S08-1)
MTLMDAVLFAPIAALISLGPGPNNFCALNNGINYGVRAAILATFGRLVSYAIFLFISAVG
LGAMLLASETAFTIIKWVGALYLVYLGIKTWRSTEFSGLQPSDGELVERTPVQPPIGKLM
LNEFLVGISNPKAILLFAAIFPQFIKPDQPTAEQFLYLGTTYLLAELCVGSTAYALFGMQ
IRRLVRSRKGVSRLNKSTGAFFVGAGGLMLGVNNH