Protein Info for OH686_01215 in Pseudomonas sp. S08-1

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 384 transmembrane" amino acids 150 to 169 (20 residues), see Phobius details TIGR02050: carboxylate-amine ligase, YbdK family" amino acids 9 to 292 (284 residues), 326.9 bits, see alignment E=5.9e-102 PF04107: GCS2" amino acids 10 to 287 (278 residues), 222.5 bits, see alignment E=3.8e-70

Best Hits

KEGG orthology group: K06048, carboxylate-amine ligase [EC: 6.3.-.-] (inferred from 40% identity to rpx:Rpdx1_2408)

Predicted SEED Role

"FIG074102: hypothetical protein"

Isozymes

No predicted isozymes

Use Curated BLAST to search for 6.3.-.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (384 amino acids)

>OH686_01215 hypothetical protein (Pseudomonas sp. S08-1)
MPEHCSAPTFGIEEEFLLVDPRSRDVVAQPPSGLLEACRRAFDTRLAEEMFRSQIELVTP
VLHDLAGARTCLLEGRQRLADIAESFGLGLYGAATHPFADWRQQLATDTPHYAQLFADYR
DVAQRSLLSGLHVHVGVPTEVDRVRVMNRVLPWLPLLLALSASSPFWNGRRSGLLSYRRA
LCGEWPRMGIPEALPDEPALQAYIDLLLASESIRKRGDVWWFIRPSARFPTLELRIADAC
PRVADVLCIAGLFRGLVAWAIEAKDPVDMGLQRLVLEENYWRARRQGGAAHFLDVDGRSA
LRALDWLAQLRERIGPWVEAFGDGEVFEQARRILRHGSSAQRQLALYEGVRSTGIGQRQA
LAAVVDQVLDETRARSVRSEPEPA