Protein Info for OH686_00450 in Pseudomonas sp. S08-1

Annotation: Helicase subunit of the DNA excision repair complex

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 156 signal peptide" amino acids 1 to 23 (23 residues), see Phobius details PF12975: DUF3859" amino acids 26 to 155 (130 residues), 113.8 bits, see alignment E=3e-37

Best Hits

KEGG orthology group: None (inferred from 70% identity to pmy:Pmen_2481)

Predicted SEED Role

"Helicase subunit of the DNA excision repair complex"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (156 amino acids)

>OH686_00450 Helicase subunit of the DNA excision repair complex (Pseudomonas sp. S08-1)
MKLFSLSALALSLGLFSNLALADVQVEGPIEYGVFASAPIKDPQPGERILSRANQPIEQT
EVVPARLGTKFGVRYQLIGKTEAEQPLTLMYFTPGLVGPDGRRQDKIELQQKLVVGAPQD
VMAFEFTEHHEVVPGDWQFMVFQGDRKLLEQSFTVR