Protein Info for OH686_00405 in Pseudomonas sp. S08-1

Annotation: Methyl-accepting chemotaxis sensor/transducer protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1220 transmembrane" amino acids 25 to 47 (23 residues), see Phobius details amino acids 59 to 83 (25 residues), see Phobius details amino acids 94 to 115 (22 residues), see Phobius details amino acids 122 to 145 (24 residues), see Phobius details amino acids 157 to 178 (22 residues), see Phobius details amino acids 190 to 211 (22 residues), see Phobius details amino acids 230 to 254 (25 residues), see Phobius details amino acids 361 to 377 (17 residues), see Phobius details PF03707: MHYT" amino acids 69 to 126 (58 residues), 66.8 bits, see alignment 7e-22 amino acids 132 to 184 (53 residues), 52 bits, see alignment (E = 2.9e-17) amino acids 198 to 253 (56 residues), 31.2 bits, see alignment 8.9e-11 TIGR00229: PAS domain S-box protein" amino acids 266 to 391 (126 residues), 90.5 bits, see alignment E=4.6e-30 amino acids 392 to 518 (127 residues), 44.6 bits, see alignment E=7.4e-16 amino acids 534 to 643 (110 residues), 57.4 bits, see alignment E=7.9e-20 PF00989: PAS" amino acids 269 to 381 (113 residues), 50.7 bits, see alignment E=8.4e-17 amino acids 410 to 511 (102 residues), 24.9 bits, see alignment E=8.9e-09 PF13188: PAS_8" amino acids 269 to 319 (51 residues), 29.8 bits, see alignment (E = 2.1e-10) PF08448: PAS_4" amino acids 275 to 338 (64 residues), 34.1 bits, see alignment 1.4e-11 amino acids 534 to 638 (105 residues), 51.3 bits, see alignment E=6.2e-17 PF13426: PAS_9" amino acids 279 to 383 (105 residues), 43 bits, see alignment E=2.4e-14 amino acids 414 to 513 (100 residues), 23.6 bits, see alignment E=2.5e-08 amino acids 538 to 635 (98 residues), 44.2 bits, see alignment E=9.8e-15 PF08447: PAS_3" amino acids 421 to 507 (87 residues), 66.5 bits, see alignment 1.1e-21 amino acids 544 to 629 (86 residues), 54.5 bits, see alignment 5.8e-18 PF00512: HisKA" amino acids 656 to 721 (66 residues), 71.8 bits, see alignment 2e-23 PF02518: HATPase_c" amino acids 768 to 878 (111 residues), 102.7 bits, see alignment E=8.3e-33 PF00072: Response_reg" amino acids 899 to 1013 (115 residues), 82.2 bits, see alignment E=1.5e-26 PF01627: Hpt" amino acids 1056 to 1134 (79 residues), 30.7 bits, see alignment 1.5e-10

Best Hits

KEGG orthology group: None (inferred from 48% identity to meh:M301_0685)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1220 amino acids)

>OH686_00405 Methyl-accepting chemotaxis sensor/transducer protein (Pseudomonas sp. S08-1)
MSYLTSLFLLDADPNLLLYGSHNPWLVGLSLAIAMFTSGMALQVAGMARLSDNRLYRQVA
LITGSLALGGGVWAMHFIGMLAFQLCARVDYAPGLTLLSLLPSLGASWVALQLLVRRTIN
RFQLVTSGVLVGAGIGAMHYSGMAAMQMAPLLRYDPYWFALSILVAVVLAILALWVRFGL
RGRLSSGKAIMASGVVMGLAISGMHYTGMAAARFIGSSEALDQQSNADSVFIALAVALIT
VTLTVFVAATNGLLRYRQLFRQMQGSESRLRAILETAVDGIVIIDDQGVIEGTNPAVERM
YGWGRGELIGRHINTVIPESYHQGFLDYLPRLMREGRSDIIGGSREVEALRKDGSLLPIR
LAIGLVNLPGKTLYVGFVSDISERKSIEQALRESEQQYRSLIGNIPGVSFRCLLDDDWTM
LFISDAVEKLTGWTADDFMSQRKSISSLYHPEDFQLVAEEVLAAIGQGRNYTVEYRLYDR
QGVEHWIWESGSAVLDEHGEPKWIDGVLLDITDSKLRNAEFESTVTAIRRALLVVEFDLQ
GNILDANQNFLDLMGYRLEEIQGRHHRMFCAQDVAESQEYADFWARLGRGELDSGEYLRL
AKGGREVWIQASYNPIFDADGKPFKVIKFATDLSQRREMEEALRDAKEVAELAAAAKTTF
LANMSHEIRTPMNAVIGFTELLLDSVLNEQQRRHLGTVRQAARSLLGLLNDILDTAKLER
GAVELENRDLSLRELCAQVCDSLRLGAEAKGLSLSLDYQESLGDYFKGDSLRIQQVLTNL
VGNAVKFTESGWVRLEVSGVPGQVHFAVRDSGIGIAEDRLQHIFDPFAQADASMSRRFGG
TGLGTTIARQLTELMGGSITVESRLGAGSVFHVQLPLQAGVEQLSERSGAERLLPALNIL
AADDVAQNIELLSLTLGALGHRVTTAGDGEQALAAFVGGRFDVLLMDVQMPRMDGLEATR
RIRRHEQAHGLRATPIIALTASVLEQDRRAAREAGMDGFASKPLEMDKLLAEIARVIGLA
PTVEQAAAVDVSADLAIDWPRGIQLWGSQQAMAAAIRRFLDEHAGSCAEVAGLLQDNHRE
AAIELVHRLRGAAGNLALLRASRLAGQLEHALKGAIPASVDDLLAALQAALAALPVELPL
PATVQESSASAMPAAELAELVEHARAALQHGELDEEALQRLSAALPARQAHALEGAINDF
DFERADALLAELLGPGDTPQ