Protein Info for NOLOHH_19160 in Escherichia coli ECOR27

Name: rhsA
Annotation: Uncharacterized conserved protein RhaS, contains 28 RHS repeats

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1402 PF20148: DUF6531" amino acids 46 to 123 (78 residues), 66.1 bits, see alignment 4.3e-22 PF05593: RHS_repeat" amino acids 365 to 396 (32 residues), 24.7 bits, see alignment (E = 3.9e-09) amino acids 413 to 444 (32 residues), 28.9 bits, see alignment (E = 1.8e-10) amino acids 454 to 486 (33 residues), 24 bits, see alignment (E = 6.2e-09) amino acids 493 to 532 (40 residues), 24.5 bits, see alignment (E = 4.4e-09) amino acids 538 to 572 (35 residues), 33.5 bits, see alignment (E = 6.4e-12) amino acids 579 to 615 (37 residues), 45.3 bits, see alignment (E = 1.3e-15) amino acids 600 to 632 (33 residues), 22.8 bits, see alignment (E = 1.5e-08) amino acids 621 to 656 (36 residues), 25.3 bits, see alignment (E = 2.5e-09) amino acids 641 to 678 (38 residues), 33.4 bits, see alignment (E = 7e-12) TIGR01643: YD repeat (two copies)" amino acids 413 to 448 (36 residues), 24.4 bits, see alignment (E = 3.1e-09) amino acids 455 to 487 (33 residues), 16.6 bits, see alignment (E = 8.6e-07) amino acids 493 to 518 (26 residues), 19.7 bits, see alignment (E = 9.2e-08) amino acids 540 to 572 (33 residues), 21.3 bits, see alignment (E = 2.9e-08) amino acids 579 to 619 (41 residues), 42.6 bits, see alignment (E = 5.3e-15) amino acids 600 to 631 (32 residues), 24.7 bits, see alignment (E = 2.4e-09) amino acids 641 to 681 (41 residues), 22.3 bits, see alignment (E = 1.4e-08) PF03527: RHS" amino acids 1154 to 1190 (37 residues), 59.8 bits, see alignment (E = 2.6e-20) TIGR03696: RHS repeat-associated core domain" amino acids 1181 to 1258 (78 residues), 79.2 bits, see alignment 2.5e-26

Best Hits

Swiss-Prot: 96% identical to RHSD_ECOLI: Protein RhsD (rhsD) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 96% identity to ecw:EcE24377A_1639)

Predicted SEED Role

"core protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1402 amino acids)

>NOLOHH_19160 Uncharacterized conserved protein RhaS, contains 28 RHS repeats (Escherichia coli ECOR27)
MSGKPAARQGDMTQYGGPIVQGSAGVRIGAPTGVACSVCPGGMTSGNPVNPLLGAKVLPG
ETDLALPGPLPFILSRTYSSYRTRTPAPVGVFGPGWKAPSDIRLQLRDDALVLNDNGGRS
IHFEPLLPGEAVYSRSESMWLVRGGKAAQPDGHTLARLWGALPPDIRLSPHLYLATNSAQ
GPWWILGWSERVPGAEDVLPAPLPPYRVLTGLADRFGRTLTYRREAAGDLAGEITGVTDG
AGREFRLVLTTQAQRAEEARTSSLSSSDSSRPLSASPFPDTLPGTEYGPDRGIRLSAVWL
MHDPAYPESLPGAPLARYTYTEAGELLAVYDRSNTQVRAFTYDAQHPGRMVAHRYAGRPE
MRYRYDDTGRVVEQLNPAGLSYRYQYEQDRITVTDSLNRREVLHTEGGAGLKRVVKKELA
DGSVTHSGYDAAGRLTAQTDAAGRRTEYGLNVVSGDITDITTPDGRETKFYYNDGNQLTA
VVSPDGLESRREYDEPGRLVSETSRSGETVRYRYDDAHSELPATTTDATGSTRQMTWSRY
GQLLAFTDCSGYQTRYEYDRFGQMTAVHREEGISLYRHYDNRGRLTSVKDAQGRETQYEY
NAAGDLTAVITPDGNRSETQYDAWGKAVSTTQGGLTRSMEYDAAGRVISLTNENGSHSDF
SYDALDRLVQQGGFDGRTQRYHYDLTGKLTQSEDEGLVTLWYYDESDRITHRTVNGEPAE
QWQYDDHGWLTDISHLSEGHRVAVHYGYDDKGRLTGERQTVENPETGELLWQHETTHAYN
EQGLANRVTPDSLPPVEWLTYGSGYLAGMKLGDTPLLEYTRDRMHRETVRSFGSMAGSNA
AYKLTSTYTPAGQLQSQHLNSLVYDRDYGWNDNGDLVRISGPRQTREYGYSATGRLESVR
TLAPDLDIRIPYATDPAGNRLPDPELHPDSTLTVWPDNRIAEDAHYVYHYDEYGRLTEKT
DLIPAGVIRTDDERTHHYHYDSQHRLVFYTRIQHGEPLVESRYLYDPLGRRMAKRVWRRE
RDLTGWMSLSRKPEMTWYGWDGDRLTTVQTDTTRIQTVYQPGSFAPLIRIETDNGEREKA
QRRSLAEKLQQEGSEDGHGVVFPAELVRLLDRLEEEIRADRVSSESRAWLAQCGLTVEQL
ARQVEPEYTPARKVHFYHCDHRGLPLALISEDGNTAWRGEYDEWGNQLNEENPYYLHQPY
RLPGQQHDEESGLYYNRNRYYDPLQGRYITQDPIGLAGGWNLYNYPLNPIIRMDPLGLYN
LYQLLYDVWHDDSYGTSSIDITGSGDLISLGGHAGLGVAFAKKKGEMLSDICIYATACGH
AGIGGGINAAITYSETKSLPTSGVSNSVGVTVGGGVGGHFAYTYVVDVDNPESSTESVGI
GAGVDASVMTLACRTWQECWVN