Protein Info for NOLOHH_16370 in Escherichia coli ECOR27

Name: yedD
Annotation: lipoprotein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 137 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details PF13987: YedD" amino acids 25 to 130 (106 residues), 200.6 bits, see alignment E=1.7e-64

Best Hits

Swiss-Prot: 99% identical to YEDD_ECOLI: Uncharacterized lipoprotein YedD (yedD) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to eco:b1928)

Predicted SEED Role

"FIG00640199: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (137 amino acids)

>NOLOHH_16370 lipoprotein (Escherichia coli ECOR27)
MKKLAIAGALMLLAGCAEVENYNNVVKTPAPDWLAGYWQTKGPQRALVSPEAIGSLIVTK
EGDTLDCRQWQRVIAVPGKLTLMSDDLTNVTVKRELYEVERDGNTIEYDGMTMERVDRPT
AECAAALDKAPLPTPLP