Protein Info for NOLOHH_08300 in Escherichia coli ECOR27

Annotation: putative permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 337 transmembrane" amino acids 14 to 36 (23 residues), see Phobius details amino acids 57 to 78 (22 residues), see Phobius details amino acids 90 to 111 (22 residues), see Phobius details amino acids 118 to 139 (22 residues), see Phobius details amino acids 220 to 243 (24 residues), see Phobius details amino acids 252 to 276 (25 residues), see Phobius details amino acids 284 to 305 (22 residues), see Phobius details amino acids 313 to 333 (21 residues), see Phobius details PF03773: ArsP_1" amino acids 9 to 334 (326 residues), 180.9 bits, see alignment E=1.6e-57

Best Hits

KEGG orthology group: K07089, (no description) (inferred from 100% identity to eck:EC55989_3946)

Predicted SEED Role

"FIG00639112: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (337 amino acids)

>NOLOHH_08300 putative permease (Escherichia coli ECOR27)
MSSWLAMLQDAAEMFVFLAVELSLLFIVISAGVSLIRQKVPDHKIQQMMGARKGRGYLLA
ALLGAVTPFCSCSTIPMLRGLLSAKAGFGPTLTFLFVSPLLNPIIVGLMWVTFGWKVTLL
YAIIATGVSVLASIILDSLGFERHIIASKSSSANCCAPAKASAKTLPGTTYTPIEVSCCS
PTAKAIEKPVVNCCNTKAVASINPIKLATKDALQQFKDVLPYLLLGVLIGSFIYGFIPSA
WIAAHAGADNPFAIPLSAVVGIPLYIRAEAVIPLASVLMTKGMGLGALMALIIGSAGASL
TEVILLKSMFRMPMIAAFLTVILGMAILMGYLTQLLF