Protein Info for NOLOHH_06205 in Escherichia coli ECOR27

Name: yihM
Annotation: Uncharacterized protein YihM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 326 PF01261: AP_endonuc_2" amino acids 92 to 238 (147 residues), 34.8 bits, see alignment E=7.3e-13

Best Hits

Swiss-Prot: 100% identical to YIHM_ECOLI: Uncharacterized protein YihM (yihM) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to eco:b3873)

Predicted SEED Role

"FIG00638475: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (326 amino acids)

>NOLOHH_06205 Uncharacterized protein YihM (Escherichia coli ECOR27)
MVTINNARKILQRVDTLPLYLHAYAFHLNMRLERVLPADLLDIASENNLRGVKIHVLDGE
RFSLGNMDDKELSAFGDKARRLNLDIHIETSASDKASIDEAVAIALKTGASSVRFYPRYE
GNLRDVLSIIANDIAYVRETYQDSGLTFTIEQHEDLKSHELVSLVKESEMESLSLLFDFA
NMINANEHPIDALKTMAPHITQVHIKDALIVKEPGGLGHKACISGQGDMPFKALLTHLIC
LGDDEPQVTAYGLEEEVDYYAPAFRFEDEDDNPWIPYRQMSETPLPENHLLDARLRKEKE
DAINQINHVRNVLQQIKQEANHLLNH