Protein Info for NOLOHH_05100 in Escherichia coli ECOR27

Name: yjcF
Annotation: Uncharacterized protein YjcF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 430 PF00805: Pentapeptide" amino acids 163 to 197 (35 residues), 27.8 bits, see alignment 2.3e-10 amino acids 268 to 304 (37 residues), 27.6 bits, see alignment 2.6e-10 amino acids 314 to 345 (32 residues), 17.8 bits, see alignment (E = 3.1e-07) amino acids 324 to 359 (36 residues), 20.7 bits, see alignment 3.7e-08 PF13599: Pentapeptide_4" amino acids 163 to 236 (74 residues), 38.2 bits, see alignment E=2.1e-13

Best Hits

Swiss-Prot: 92% identical to YJCF_ECOLI: Uncharacterized protein YjcF (yjcF) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to eck:EC55989_4561)

Predicted SEED Role

"FIG00638091: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (430 amino acids)

>NOLOHH_05100 Uncharacterized protein YjcF (Escherichia coli ECOR27)
MRYNGLNNMFFSLCQINDNHSFTSSSHTKKTKSYNYSKHHKNTLIDNKALSLFKMDDHEK
VIGLIQKMKRIYDSLPSGKITKETDRKIHKHFIDIALYANNKCDDRITRRVYLSKEKEVS
IKVVYFINNVAVHNNTIEIPQTVNGGYDFSHLSLKGIVIKDEDLSNSNFAGCRLQNAIFQ
DCNMYKTNFYYAIMEKILFDNCILDDSNFAQIKMADGTLNACSAMHVQFYNAAMNRANIK
NTFLDYSNFYMAYMAEVNLYKVIAPYVNLFKADLSFSKLDLINFEHADLSRVNLNKAILQ
NINLIDSKLFCTWLTNTFLEMVICTGSNMANVNFNNANLSNCHFNCSILTKACMFNTRLY
RVNFDEASVQGMGISILRGEENIPIDSDTLVTLQKFFEEDCTSHTGMSQTEDNINAVAMK
ITADIMQHAD