Protein Info for NOLOHH_03875 in Escherichia coli ECOR27

Name: yjiC
Annotation: Uncharacterized protein YjiC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 276 PF10887: DUF2686" amino acids 1 to 276 (276 residues), 504 bits, see alignment E=4.9e-156

Best Hits

Swiss-Prot: 92% identical to YJIC_ECOLI: Uncharacterized protein YjiC (yjiC) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 100% identity to ecy:ECSE_4598)

Predicted SEED Role

"Uncharacterized protein YjiC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (276 amino acids)

>NOLOHH_03875 Uncharacterized protein YjiC (Escherichia coli ECOR27)
MSMPLSNALQSQIITDNHFLHHPKVDNELTRKYERARLDTENIYLLPLARGNNHNYDGKS
VVEIRKLDISKESWPFNYVTEACRESDGITTTGRMLYRNLKITSALDEIYGGICKKAHAA
TELAEGLRLNLFMKSPFDPVEDYTVHEITLGPGCNVPGYAGTTIGYISTLPVSQAKRWTN
EQPRIDIYIDQIITVSGVANSSGFALAALLNANIGMGNDPIIGIEAYPGTAEIHAKMGYN
VIPGDEDAPLKRMTLQPSSLPELFELKNGEWNYIGK