Protein Info for NOLOHH_02275 in Escherichia coli ECOR27

Name: tssM
Annotation: type VI secretion system membrane subunit TssM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1174 transmembrane" amino acids 26 to 45 (20 residues), see Phobius details amino acids 65 to 84 (20 residues), see Phobius details amino acids 450 to 471 (22 residues), see Phobius details TIGR03348: type VI secretion protein IcmF" amino acids 32 to 1170 (1139 residues), 943.5 bits, see alignment E=1.1e-287 PF14331: IcmF-related_N" amino acids 204 to 454 (251 residues), 213.9 bits, see alignment E=5.3e-67 PF06761: IcmF-related" amino acids 506 to 818 (313 residues), 243.7 bits, see alignment E=6.7e-76 PF21070: IcmF_helical" amino acids 947 to 1005 (59 residues), 31.1 bits, see alignment 4.5e-11 PF06744: IcmF_C" amino acids 1048 to 1153 (106 residues), 83.5 bits, see alignment E=2.2e-27

Best Hits

KEGG orthology group: K11891, type VI secretion system protein ImpL (inferred from 99% identity to eck:EC55989_0220)

Predicted SEED Role

"IcmF-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1174 amino acids)

>NOLOHH_02275 type VI secretion system membrane subunit TssM (Escherichia coli ECOR27)
VFRLPTPRLFSGLKSALRPAMPRFKVSAFWLLILAWIFLLVWIWWKGPTWTLYEEQWLKP
LANRWLATAAWGIIALVWLTVRVMKRLQQLEKQQKQQREEAIDPLSVELNAQQRYLDRWL
LRLQRHLDNRRFLWQLPWYMVIGPAGSGKTTLLREGFPSDIIYAPEGARGAEQRLYLTPH
VGKQAVIFDIDGTLCAPADADILHRRLWEHALGWLKEKRARQPLNGIILTLDLPDLLTAD
KRRREHLLQTLRSRLQDIRQHLHCQLPVYVVLTRLDLLQGFAALFQSLNRQDRDAILGVT
FTRRAHENDDWRTELNAFWQTWVDRMNLALPDLMVAQTHTRASLFSFSRQMQGSREPLVS
LLEGLLDGENMNVMLRGVYLTSSLQRGQMDDIFTQSAARQYRLGNNPLASWPLVDTAPYF
TRSLFPQALLAEPNLATESRAWLIRSRRRLTVFSATGGVAALLLITGWHHYYNGNYQSGI
TVLKQAKAFMDVPPPQGEDDFGNLQLPLLNPVRDATLAYGDWGDRSRLADMGLYQGRRIG
PYVEQTYLQLLEQRYLPSLFNGLVKAMNAAPPESEEKLAVLRVMRMLEDKSGRNNEVVKQ
YMAKRWSEKFHGQRDIQAQLMSHLDYALAHTDWHAERQAGDGDAISRWTPYDKPVVSAQK
ELSKLPVYQRVYQSLKTRALGVLPADLNLRDQVGPTFDQVFTSADDNKLVVPQFLTRYGL
QSYFVKQRDELVELTAMDSWVLNLTRSVKYSDADRAEIQRQLTEQYISDYTATWRAGMDN
LNIRNFESIGQLTGALEQVISGDQPLQRALTVLRDNTQPGVFSEKLSAKERDEALAEPDY
QLLTRLGHEFAPENSTLAVQKDKESTMQAVYQQLTELHRYLLAIQNAPVPGKSALKAVQL
RLDQNSSDPIFATRQMAKTLPAPLNRWVGRLADQAWHVVMVEAVHYMEVDWRDSVVKPFN
EQLANNYPFNPRSAQDASLDAFERFFKPDGILDTFYQQNLKLFIDNDLSLEDGDNSVIIR
EDIIAQLKTAQKIRDIFFSKQNGLGTSFAVETVSLSGNKRRSVLNLDGQLVDYSQGRNYT
AHLVWPNNMREGNESKLTLIGTSGNAPRSISFSGPWAQFRLFGAGQLTGVQDGNFTVRFS
VDAGAMTYRVHTDTEDNPFSGGLFSQFGLSDTLY