Protein Info for NOLOHH_01815 in Escherichia coli ECOR27

Name: araH
Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 323 signal peptide" amino acids 1 to 27 (27 residues), see Phobius details transmembrane" amino acids 42 to 59 (18 residues), see Phobius details amino acids 65 to 82 (18 residues), see Phobius details amino acids 88 to 110 (23 residues), see Phobius details amino acids 117 to 136 (20 residues), see Phobius details amino acids 166 to 187 (22 residues), see Phobius details amino acids 211 to 233 (23 residues), see Phobius details amino acids 245 to 265 (21 residues), see Phobius details amino acids 271 to 289 (19 residues), see Phobius details amino acids 295 to 314 (20 residues), see Phobius details PF02653: BPD_transp_2" amino acids 38 to 307 (270 residues), 117.9 bits, see alignment E=2.3e-38

Best Hits

KEGG orthology group: K02057, simple sugar transport system permease protein (inferred from 100% identity to eoh:ECO103_0305)

Predicted SEED Role

"Ribose ABC transport system, permease protein RbsC (TC 3.A.1.2.1)" in subsystem D-ribose utilization (TC 3.A.1.2.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (323 amino acids)

>NOLOHH_01815 sugar ABC transporter permease (Escherichia coli ECOR27)
MAELKKRHEFWLALLIVVLFVGLAWRSDEFLTFGNLYDLANNYAMLTILACGLFVVLISG
GIDISFPAMTIIAQYGMVLLLQKIGGNFAVAFALAGCIGILLGLINALLVNRLRVPSIII
TISTLNIFYGLLLWLSKGVWLYDFPPWFEQGVMLFKYTDADGYDYGLGLPLIAMITVVLL
TAFIMNFTSVGRKIYALGGNRESASRIGFSVLKLQLFVYGYMGLMSGAAGVVQSWTVMTV
APDSLLGYELTVLAAVVLGGTSLLGGRGTLTGTLLGVVLLAVMQNGLNLLGVSSYWQTLI
TGIIIVASISATAWSQHQNRSLL