Protein Info for NIAGMN_26030 in Escherichia coli ECRC102

Annotation: phage tail tape measure protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1026 transmembrane" amino acids 411 to 433 (23 residues), see Phobius details PF20155: TMP_3" amino acids 84 to 273 (190 residues), 201.6 bits, see alignment E=1.7e-63 TIGR02675: tape measure domain" amino acids 157 to 231 (75 residues), 80.1 bits, see alignment 1.2e-26 PF06120: Phage_HK97_TLTM" amino acids 395 to 495 (101 residues), 127.5 bits, see alignment E=9.4e-41 amino acids 489 to 632 (144 residues), 111 bits, see alignment E=1e-35 TIGR01541: phage tail tape measure protein, lambda family" amino acids 671 to 989 (319 residues), 241.9 bits, see alignment E=9.8e-76 PF09718: Tape_meas_lam_C" amino acids 808 to 879 (72 residues), 65.3 bits, see alignment 6.4e-22

Best Hits

KEGG orthology group: None (inferred from 100% identity to ecs:ECs1983)

Predicted SEED Role

"Phage tail length tape-measure protein 1"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1026 amino acids)

>NIAGMN_26030 phage tail tape measure protein (Escherichia coli ECRC102)
MATLRELIIKISANSQSFQSEIQRASRMGSEYYRTLQNGGRQAAAAARDQRRALAELNSQ
LTEIRGSAVGMAGAFAGAFATGHLISLADEWSSVNARLKQASQSSDEFSSSQKVLMDISQ
RTGTAFSDNAALFARSAASMREYGYSADDVLKVTEAISTGLKISGASTAEAGSVITQFSQ
ALAQGVLRGEEFNSVNESGDRIVRALAAGMGVARKDLKAMADDGQLTADKVVPALISQLE
VLRDEYAAMPETVSDGITKVENAFMAWVGGANEASGVTKTLSGVLNGVAGQIDNVATAVG
ALVAVGVARYFGNMASGAMSATAGLVTAARNEVALAEAQFRGTQIATARARAAVYRAQQA
VAAARGTEMQIAAEARLAATQERLNRNIAARSAAQNALNSTTAVGSRLMSGALGLVGGVP
GLVMLGAAAWYTLYQNQEQARESARQYALTIDEIAHKTPSMSLPEASDNEGRTRAALTEQ
NRLIDEQASRVKSLQEKAQSIQDVLAGLEDRRVALIRQQAAEQNKVYQSMLVMNGQHTEF
NRLLGLGNELLQQRQGLVNVPLRLPQATLDDKQQSALTKTERELALSRLKGEEKERARLG
YAADDLGFVGDSYQEARQRYISNALEAWRNNEANKPKSRGGKSETEKAEDSFSRLLKQQK
AQLALAGQNTELAKLKYQTAQGELKTLTEIQKQELLRNAALIDQQKIREQLRSREETLKN
ENAAARASNDAELLGYGQGERARERMRELQQIRDSFRQKDADLQSQYQTGDISEDFYRQA
LAQNAQYLSERLKDQETFYAESDAQRADWQKGLQEGFSNWVDNASDYASQAAQLATEGIS
GMVNNITEMLNGNKVEWRSWASSVLQEISKVLMNAAIVNGIKTAANGMSGAGGFLGSIGD
WLGGAVANAKGGVYTSANLSAYSNSIVDTPTYFAFAKGAGLMGEAGPEAIMPLTRAADGS
LGVRAVGSMNGSAGLVYSPVYHIAIQNDGTNGQIGPEAAGSLVQLIDQRVQAVMLSMRRD
GGMLSG