Protein Info for NIAGMN_17140 in Escherichia coli ECRC102

Annotation: ABC-type transport system

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 192 transmembrane" amino acids 6 to 27 (22 residues), see Phobius details amino acids 36 to 60 (25 residues), see Phobius details amino acids 72 to 91 (20 residues), see Phobius details amino acids 102 to 124 (23 residues), see Phobius details amino acids 150 to 174 (25 residues), see Phobius details PF12822: ECF_trnsprt" amino acids 10 to 173 (164 residues), 32.2 bits, see alignment E=5.4e-12

Best Hits

KEGG orthology group: None (inferred from 98% identity to eoi:ECO111_3665)

Predicted SEED Role

"Substrate-specific component STY3230 of queuosine-regulated ECF transporter" in subsystem ECF class transporters or Queuosine-Archaeosine Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (192 amino acids)

>NIAGMN_17140 ABC-type transport system (Escherichia coli ECRC102)
MARSHFSSQALVLIVISIAINMIGGQLASMVKLPIFLDSIGTLISAVLLGPVIGMLTGLL
TNLLWGLLTDPIAAAFAPVAMVIGLVAGWLARAGWFRTLPKVVVSGVIITLAVTVVAVPL
RTALFGGVTGSGADLFVAWMHSMGQNLVESVAITVIGANLVDKTLTAVIVWLLLRQLPIR
TTRHFPAMAAVR