Protein Info for NIAGMN_09350 in Escherichia coli ECRC102

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 392 transmembrane" amino acids 12 to 34 (23 residues), see Phobius details amino acids 54 to 76 (23 residues), see Phobius details amino acids 84 to 102 (19 residues), see Phobius details amino acids 108 to 130 (23 residues), see Phobius details amino acids 138 to 159 (22 residues), see Phobius details amino acids 171 to 191 (21 residues), see Phobius details amino acids 212 to 235 (24 residues), see Phobius details amino acids 247 to 267 (21 residues), see Phobius details amino acids 273 to 293 (21 residues), see Phobius details amino acids 299 to 321 (23 residues), see Phobius details amino acids 331 to 352 (22 residues), see Phobius details amino acids 361 to 385 (25 residues), see Phobius details PF07690: MFS_1" amino acids 21 to 322 (302 residues), 67.9 bits, see alignment E=7.7e-23 PF06779: MFS_4" amino acids 23 to 380 (358 residues), 459.5 bits, see alignment E=1e-141

Best Hits

Swiss-Prot: 91% identical to YJIJ_ECOLI: Uncharacterized protein YjiJ (yjiJ) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to ecz:ECS88_4953)

Predicted SEED Role

"Putative transport protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (392 amino acids)

>NIAGMN_09350 MFS transporter (Escherichia coli ECRC102)
MNSTSHPVERFSFSTALFGMLVLTLGMGLGRFLYTPMLPVMLAEGEFSFSELSWIASGNY
AGYLAGSLLFSFGAFHLPSRLRPFLLASALATGLLILAMAWLPPFLLVFIIRFLAGVASA
GMLIFGSTLIMQHTRHPFVLAALFSGVGVGIALGNEYVLAGLHFALSSQTLWQGAGALSA
IILLALALLIPSNKHVIPPAPLAKIAQQPMSWWLLAILYGLAGFGYIIVATYLPLMAKDA
GQPVLTAHLWTLVGLSIVPGCFGWLWAAKRWGALPCLTANLLVQAICVLLTLASSSPLLL
IISSIGFGGTFMGTTSLVMTIARQLSVPGNLNLLGFVTLIYGIGQILGPALTSMLGNGTS
ALASATLCGAAALFIAALICGMQIFKLHTNYS