Protein Info for NIAGMN_07495 in Escherichia coli ECRC102

Annotation: Partial O replication protein for prophage CP-933H

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 202 PF04492: Phage_rep_O" amino acids 22 to 115 (94 residues), 124.1 bits, see alignment E=1.4e-40 TIGR01610: phage replication protein O, N-terminal domain" amino acids 23 to 115 (93 residues), 132.9 bits, see alignment E=2.1e-43

Best Hits

KEGG orthology group: None (inferred from 100% identity to ece:Z0311)

Predicted SEED Role

"Origin specific replication initiation factor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (202 amino acids)

>NIAGMN_07495 Partial O replication protein for prophage CP-933H (Escherichia coli ECRC102)
MTNTAKILNFGRGNFAGQERNVADLDDGYARLSNMLLEAYSGADLTKRQFKVLLAILRKT
YGWNKPMDRITDSQLSEITKLPVKRCNEAKLELVRMNIIKQQGGMFGPNKNISEWCIPQN
EGKSPKTRDKTSLKLGDCYPSNWGIAIPQNRGTQKTLLQKKKEKIIRPRILANPLTSQKT
IFLWLNRMLQFRAAASGEQQKT