Protein Info for NIAGMN_04365 in Escherichia coli ECRC102

Name: ybhQ
Annotation: Inner membrane protein YbhQ

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 136 transmembrane" amino acids 12 to 32 (21 residues), see Phobius details amino acids 38 to 58 (21 residues), see Phobius details amino acids 78 to 95 (18 residues), see Phobius details amino acids 101 to 120 (20 residues), see Phobius details PF11076: YbhQ" amino acids 1 to 132 (132 residues), 244.6 bits, see alignment E=1.1e-77

Best Hits

Swiss-Prot: 100% identical to YBHQ_SHIFL: Inner membrane protein YbhQ (ybhQ) from Shigella flexneri

KEGG orthology group: None (inferred from 100% identity to eco:b0791)

Predicted SEED Role

"Putative inner membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (136 amino acids)

>NIAGMN_04365 Inner membrane protein YbhQ (Escherichia coli ECRC102)
MKWQQRVRVATGLSCWQIMLHLLVVALLVVGWMSKTLVHVGVGLCALYCVTVVMMLVFQR
HPEQRWREVADVLEELTTTWYFGAALIVLWLLSRVLENNFLLAIAGLAILAGPAVVSLLA
KDKKLHHLTSKHRVRR