Protein Info for NIAGMN_00855 in Escherichia coli ECRC102

Name: ydiM
Annotation: Inner membrane transport protein YdiM

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 404 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 42 to 64 (23 residues), see Phobius details amino acids 73 to 90 (18 residues), see Phobius details amino acids 96 to 112 (17 residues), see Phobius details amino acids 133 to 155 (23 residues), see Phobius details amino acids 161 to 180 (20 residues), see Phobius details amino acids 210 to 230 (21 residues), see Phobius details amino acids 247 to 268 (22 residues), see Phobius details amino acids 275 to 293 (19 residues), see Phobius details amino acids 298 to 325 (28 residues), see Phobius details amino acids 337 to 358 (22 residues), see Phobius details amino acids 365 to 385 (21 residues), see Phobius details PF07690: MFS_1" amino acids 12 to 349 (338 residues), 105.9 bits, see alignment E=1.1e-34 amino acids 249 to 394 (146 residues), 42.6 bits, see alignment E=1.9e-15

Best Hits

Swiss-Prot: 99% identical to YDIM_ECOLI: Inner membrane transport protein YdiM (ydiM) from Escherichia coli (strain K12)

KEGG orthology group: None (inferred from 99% identity to eco:b1690)

Predicted SEED Role

"Putative transport system permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (404 amino acids)

>NIAGMN_00855 Inner membrane transport protein YdiM (Escherichia coli ECRC102)
MKNPYYPTALGLYFNYLVHGMGVILMSLNMASLETLWQSNAAGVSIVISSLGIGRLSVLL
FAGLLSDRFGRRPFIMLGMCCYMAFFFGILQTNNIIIAYVFGFLAGMANSFLDAGTYPSL
MEAFPRSPGTANILIKAFVSSGQFLLPLIISLLVWAELWFGWSFMIAAGIMFINALFLYR
CTFPPHPGRRLPVIKKTTSSTEHRCSIIDLASYTLYGYISMATFYLVSQWLAQYGQFVAG
MSYTMSIKLLSIYTVGSLLCVFITAPLIRNTVRPTTLLMLYTFISFIALFTVCLHPTFYV
VIIFSFVIGFTSAGGVVQIGLTLMAERFPYAKGKATGIYYSAGSIATFTIPLITAHLSQR
SIADIMWFDTAIAAIGFLLALFIGLRSRKKTRHHSLKENVAPGG