Protein Info for MPMX26_03024 in Acinetobacter radioresistens SK82

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 492 transmembrane" amino acids 12 to 31 (20 residues), see Phobius details amino acids 43 to 66 (24 residues), see Phobius details amino acids 87 to 114 (28 residues), see Phobius details amino acids 150 to 167 (18 residues), see Phobius details amino acids 179 to 199 (21 residues), see Phobius details amino acids 222 to 246 (25 residues), see Phobius details amino acids 258 to 282 (25 residues), see Phobius details amino acids 318 to 345 (28 residues), see Phobius details amino acids 357 to 378 (22 residues), see Phobius details amino acids 388 to 408 (21 residues), see Phobius details amino acids 433 to 455 (23 residues), see Phobius details amino acids 467 to 487 (21 residues), see Phobius details PF00209: SNF" amino acids 5 to 119 (115 residues), 138.1 bits, see alignment E=2e-44 amino acids 125 to 475 (351 residues), 228 bits, see alignment E=1.2e-71

Best Hits

KEGG orthology group: K03308, neurotransmitter:Na+ symporter, NSS family (inferred from 77% identity to acd:AOLE_00085)

Predicted SEED Role

"Sodium-dependent transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (492 amino acids)

>MPMX26_03024 hypothetical protein (Acinetobacter radioresistens SK82)
MTDTRENWSARSGFIIAAIGSAVGLGNIWRFPYVAYENGGGAFLIPYLIALLTAGLPLLF
LDYAVGHRSNGAPPKAYKKLFKPAESLGWWQVCVCIIIALYYAGVLTWAGSYIFFSMGQI
WGNDPEAFFFKTFLRTSEASNFDMSFVSHLFWPLVGVWALVLAILYGGVKKGVELSNRIF
MPLLVVLFTILVIQALRLPGAADGLNAFFTPNWKAMMDYKVWLAAYGHIFFSLSVGFGIM
VTYASYLKPKTNLTGSGLIVGFANSSFELLAGIGVFAALGFMAHSAGTSVQEVVSGGIGL
AFIAFPKLISSLGAGADLFGILFFGSLFVAGVTSMVSILEVPIAAMQDKLNWSRKKAVSV
IGFSTGAVSIFLFSSVNAIKLVDIIDHFINNLGIVSGALVSIIIVSWFKRVLMTELEIHI
NSISTVKLGRTWELTLTVVTPVVLLSTLALTLNALLQKGYGDYSLSLQVWFGWGSIIFCA
LGALLFTKLSQR