Protein Info for MPMX26_02777 in Acinetobacter radioresistens SK82

Annotation: putative membrane transporter protein YfcA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 258 signal peptide" amino acids 1 to 22 (22 residues), see Phobius details transmembrane" amino acids 45 to 64 (20 residues), see Phobius details amino acids 72 to 97 (26 residues), see Phobius details amino acids 101 to 119 (19 residues), see Phobius details amino acids 131 to 153 (23 residues), see Phobius details amino acids 160 to 180 (21 residues), see Phobius details amino acids 191 to 216 (26 residues), see Phobius details amino acids 231 to 250 (20 residues), see Phobius details PF01925: TauE" amino acids 9 to 248 (240 residues), 156.2 bits, see alignment E=5.7e-50

Best Hits

KEGG orthology group: K07090, (no description) (inferred from 70% identity to aci:ACIAD3306)

Predicted SEED Role

"FIG00349970: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (258 amino acids)

>MPMX26_02777 putative membrane transporter protein YfcA (Acinetobacter radioresistens SK82)
MDIEIIISLVFFAFCAGLIDAAVGGGGLIQIPALMGTFPHLPPATIFGTNKLASIAGTAS
AAFSYARRVRFVWKLLVVIASCAFVSSFIGAACVSMIPVSVLRPLVLLMLIIMAVYTFMK
KQFGQVHTERPVNSSFLLMAALGSILIGFYDGIFGPGTGSFFIFFFIRFLSVDFLHASAL
SKIGNLMTNLAALSFFIPTGHVLFGIGLGMALANIFGSLMGVRLALKYGSGLIRILFLIL
VSILIIRLTYQMVTVGFM