Protein Info for MPMX26_02742 in Acinetobacter radioresistens SK82

Annotation: ATP-dependent RNA helicase DeaD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 618 PF00270: DEAD" amino acids 27 to 201 (175 residues), 157.2 bits, see alignment E=4.9e-50 PF04851: ResIII" amino acids 27 to 199 (173 residues), 30.2 bits, see alignment E=6.3e-11 PF00271: Helicase_C" amino acids 241 to 349 (109 residues), 99.2 bits, see alignment E=2.6e-32

Best Hits

KEGG orthology group: None (inferred from 81% identity to acb:A1S_3104)

Predicted SEED Role

"ATP-dependent RNA helicase NGO0650" in subsystem ATP-dependent RNA helicases, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (618 amino acids)

>MPMX26_02742 ATP-dependent RNA helicase DeaD (Acinetobacter radioresistens SK82)
MSKTFAEFSLHESLTQALTDLGFTAPTAVQEQAIPAALEGKDLLVSSQTGSGKTAAFLLP
TLNALADQDTFLPFKERMRAVTQPNILVISPTRELAQQVCQDAIALVRHMKGVRIAAIMG
GMPFGKQIQQLKGAQVVVATPGRLLDLVNRRQIKLDKVDALIVDEADRMLDLGFSEDLEA
ISELALNRKQTLMFSATFADRIIRLAECMMKDPMRIAIETGHSTNTDITQTLHWTDGFEH
KKKLLTHWLEDETLDQAVVFASTQEDTDMLAEELAEAGHSVVALHGAMPQTVRNRRLRSI
REGRAKILVATDVAARGLDVPTISHVINFGLPMKHEDYVHRIGRTGRAGRTGKAITLATY
RERGKIRALEDYLETRLNVSEIEGLEPSPPPARPRREGGGGKRPGGRGGFGGGRRFEGES
NFKRREGGRDDRPRRSFDDRPRGERPFGDDRPKRDFGDRPARRDFGDRPQRSFDDKPRGE
RSFGGAERPRREFNSDRPQRSFGDRPQSRSFGGEDRPRRSFDDKPRGERNFGGDRPRREG
GFNDKPRFDSNDDNRGNRVDYKPRNGGFRAAGDRSERPAGGDRPRRSFDDKPRGERSFGG
EDRPRRDFGGERRRKFQD