Protein Info for MPMX26_02516 in Acinetobacter radioresistens SK82

Annotation: Multidrug resistance protein MdtC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1034 transmembrane" amino acids 12 to 29 (18 residues), see Phobius details amino acids 333 to 353 (21 residues), see Phobius details amino acids 359 to 380 (22 residues), see Phobius details amino acids 385 to 405 (21 residues), see Phobius details amino acids 430 to 454 (25 residues), see Phobius details amino acids 459 to 484 (26 residues), see Phobius details amino acids 529 to 550 (22 residues), see Phobius details amino acids 860 to 878 (19 residues), see Phobius details amino acids 889 to 909 (21 residues), see Phobius details amino acids 915 to 939 (25 residues), see Phobius details amino acids 962 to 982 (21 residues), see Phobius details amino acids 994 to 1018 (25 residues), see Phobius details PF00873: ACR_tran" amino acids 4 to 1018 (1015 residues), 910.3 bits, see alignment E=1.5e-277 PF03176: MMPL" amino acids 306 to 507 (202 residues), 28.3 bits, see alignment E=8.7e-11

Best Hits

KEGG orthology group: K03296, hydrophobic/amphiphilic exporter-1 (mainly G- bacteria), HAE1 family (inferred from 80% identity to aci:ACIAD0783)

Predicted SEED Role

"RND multidrug efflux transporter; Acriflavin resistance protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1034 amino acids)

>MPMX26_02516 Multidrug resistance protein MdtC (Acinetobacter radioresistens SK82)
MWFTRISVKYPVFTIMMMLCLMVLGLASWQRMGVEEYPDVDFPFVVVYTSYPGASPETVE
SEITKKMEDQINTISGLKKLTSTSSEGLSTIVAEFDLDISSSVAAQDVRDKIASVTAQFR
DEIEDPVVERYDPTSSAIMSLVFESNNMSLKDLSSYLDQRILPQLRTVEGVGNVNLLGDA
QRQIRIAVDPKKLRSFGVGIDQVINTLKNENVQIPGGALQQPDSELVVEIQAKVLNPYQF
GELIIANKQGTPVYLKQVATITDSQAEMETAAYLNGKSAVAIDILRSADANIVDVVKNAY
QVIDRIEQQLPAGTTLKVVVDNSESIQSTIKDVARTIVEGAVLAIIIVLLFLGSFRSTVI
TGLTLPIALLGTLTFIWAFGFTINMMTLLALSLSIGLLIDDAIVVRENIVRHSDMGKDHV
TAALDGTKEIGLAVLATTLTIVAVFLPVAFMGGIIGRFFYQFGVTVSTAVLISMFVSFTL
DPMLSAHWAERKDRPKKQNTLTRFFAWTSKKLDDLTAVYEKLLRLALRFRLLTVLIAVLS
LFGAFALSKLIGTEFVPTPDKGSIRVKFETPVDASLQYTQAKLQQVENIIRQHPEVQTTY
GVINGMTDRGKNHGSIRVTVTPRHEREQTLNDLNNDLRNRLQQVGGITITSVASADEVVS
GGRKPIQISIKGPDLDELQRISDRFMAEMKKINGVVDLETSLKEPKPTLSVSINRVLASD
LGLSVNQIANVVRPLIAGDNVTTWEDERGENYDVNLRLSENARTLPSDIQNMYITSEKLD
NNNQNILVPLATVASFKETSGASQINRRELSREVLIEANTSGRPAGDIGGDIDAMQAQFK
LPPGYSFDTEGANADMAESLGYAITAITLSIVFIYIVLGSQFNSFIHPAAIMASLPLSLI
GVFLALYLFNSTMNLFSIIGIIMLMGLVTKNAILLIDFIKKGIESGMDRYDAIVAAGTTR
LRPILMTTSAMVMGMVPLALGLGESGEQSSPMAHAVIGGVITSTLLTLVVVPIIFTYLDD
LKNLMIRQFRKLMS