Protein Info for MPMX26_02509 in Acinetobacter radioresistens SK82

Annotation: Sensor histidine kinase RcsC

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1460 PF01627: Hpt" amino acids 25 to 93 (69 residues), 45.6 bits, see alignment 1.3e-15 amino acids 204 to 272 (69 residues), 44.2 bits, see alignment 3.7e-15 amino acids 514 to 605 (92 residues), 50.6 bits, see alignment 3.8e-17 amino acids 692 to 763 (72 residues), 43.3 bits, see alignment 6.9e-15 PF02518: HATPase_c" amino acids 1038 to 1173 (136 residues), 68.1 bits, see alignment E=1.8e-22 PF01584: CheW" amino acids 1180 to 1315 (136 residues), 59.9 bits, see alignment E=4.4e-20 PF00072: Response_reg" amino acids 1341 to 1452 (112 residues), 100.9 bits, see alignment 9.9e-33

Best Hits

Predicted SEED Role

"Signal transduction histidine kinase CheA (EC 2.7.3.-)" in subsystem Bacterial Chemotaxis or Flagellar motility or Two-component regulatory systems in Campylobacter (EC 2.7.3.-)

Isozymes

Compare fitness of predicted isozymes for: 2.7.3.-

Use Curated BLAST to search for 2.7.3.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1460 amino acids)

>MPMX26_02509 Sensor histidine kinase RcsC (Acinetobacter radioresistens SK82)
MKQILKDLIGTTTLPEDSYLDQDAEILEIFVEELEEIFTDLDVLIQQWIQQPEQQDKLTS
IRRYFHTLKGSGRMVGAKSSGELAWTVEDLLNRIIAKTQAFTPAISRYVELVFKIYKYKL
FYNFQNSQPHAIDLRPLVLIGQQLQQQGSLEPALEELLELSWTLCSPETVTGLELVEHTA
ETLPPLGVEKLEIHEEFDSLTAETLAIFLEESEEHLATIDEFLNNNEQGSNYNALIRALH
TLRGSSAMAQVEHIFEASSKVENLFKTMLQDELVSTSNETALLTHYAEFVRDYLYILKQE
CNIEQLEQVYQTFNHAWENYGFHQEPVDDLVNPQGLVSRLLELEINQLLDAEFEFDQRVR
TEYPEYLQLLVQQAQELVEHTRNRASQGVYDFTLELLQSYQQLLAKPQLLNLDYAYELYT
QAHQQLIYLFDTLAAGQRVSLSPAHQSLLEELSAFVQQEIEQVEELSTVTEPFKAPVDVA
VLEHTFNLGELSARIAADKALMHSEHSNQVADADLRDIFLEEAEELLAGMDSDLNSWTKE
SGQVTALNNLMRYLHTLKGGANMVQATHMGLIAHELESIYQRIINGQVQVSTVLMSIIRL
VQDELAERIQILREQQIDYPAPATIEILKNIESISTGVLVTTAEPKVAEEKLSESSQNIE
SDIADCTLADAEIAEHSEELQTDEQVRSIVEEVFLEEAEELLQTAHNLLDQWVEERSNRS
LLLQLQRNAHSLKGGARMAELEPVAVIAYALENTFEQFGLHNLTTSVYDPLLHTALRWLE
NAIFKEQYENFDSLKHSLDSIQFTEIPAQLINQIPADNIVADSSLFEFVHGDGTEPPSMM
GEWDNTERTENNEMIRISADLVEKMIDLAGENSINRSRVEMDVGQVGSILSDMELAIQRL
ADQLRRMEGELESQIIAKHGTENSRYSDFDPLEMDQYSSLNQLSKSLAESASDLLDFKTT
LSEKIRDTEGLLLQQSRIQAEIQENLMRTRLVPFSRLLPRLQRIARQTSSALNRPAELVV
QNTEGELDRNILERLVTPLEHMLRNAIDHGIETIEQRLKQGKPESGRIELNINRQGTDVI
ITFTDDGQGINLEKLKNKALERGLIGAEQKLEAEELAQLIFHPGLSTAVEITQISGRGVG
LDVVQSSIKAMGGHVTVESVQGQGTTFTIRVPTTVAISDALMVKAGDQQYAVPLAQIERI
VRISPSMLEDYFAGKEDTFRIDNMYYKLRYLSEFVANQSLPRLTGIVHSLPVLLIKGSSG
QTVALLVDQLVGSRAQIVVKPVGQQLASVGAVAGATILGDGQVCLILDGQYIARQVQSSL
RVKEVKESRELHRFNDERRLIMIVDDSVTVRKVTSRLLERQGYDVVTAKDGVEAIEQLES
IKPDLMLLDIEMPRMDGFEVTNLVRHHDVHRNMPIIMITSRTGEKHRERAFALGATQYMG
KPFQEADLLANIEALLEVMV