Protein Info for MPMX26_02462 in Acinetobacter radioresistens SK82

Annotation: Chromosome partition protein Smc

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1149 signal peptide" amino acids 1 to 16 (16 residues), see Phobius details TIGR02168: chromosome segregation protein SMC" amino acids 2 to 1137 (1136 residues), 888.8 bits, see alignment E=3.1e-271 PF02463: SMC_N" amino acids 3 to 138 (136 residues), 116.5 bits, see alignment E=1.9e-37 amino acids 388 to 1130 (743 residues), 92.7 bits, see alignment E=3.4e-30 PF13476: AAA_23" amino acids 5 to 229 (225 residues), 58.5 bits, see alignment E=2.2e-19

Best Hits

Predicted SEED Role

"Chromosome partition protein smc" in subsystem Two cell division clusters relating to chromosome partitioning

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1149 amino acids)

>MPMX26_02462 Chromosome partition protein Smc (Acinetobacter radioresistens SK82)
MRLSSLKLSGFKSFADSTTLNFRDSRSAVVGPNGCGKSNVIDAIRWVMGESSARQLRGGS
MQDVIFTGTAKRKPVGMASVELRFDNTYGKLGGAYNAYNELAVRRQVNREGKSEYFLNGT
RCRRRDITDIFLGTGLGPRSYAIIEQGMINRLVDAKPDEMRVFIEEAAGISRYQARRRET
LLHLEHTTQNLSRLEDIALELKSQLKSLKKQAETAVQYKELENRIRTLKIEILSVQCERS
QHLQQEYTLQMNELGESFKLVRSELHTLEHNLTSTSELFQRLLQQSAPLQSEWQQAEKKM
AELKMTLEQKQSLFQQNTTMLNQLEQQKVQTKERLKLIELQLENLYQQQEQLDEQTQQQE
QQHQGRTQDIQLLKAQQQQVGQQFEQLKQQVEKQQQQKMQMLAQTEQLLKNIGRIEQQRE
TLHTQIAQLQQQYESDELEQRHTEKQQLQQQIEVLELQINTRKQKIIGLESVYTQKSSKL
GELKSSIQILYSEQKNLKQLMTQYGPVIQKDQVQLVQILKLNKQAKPYASLIEKFLSKWL
TAHVLETGQSFSENISRQLKGHSDELIQLDHLPCLANWIETPHYSLWTQVAVATTLSEAL
YLKDKLHTGQSILTLDGYHVGADWAIALYYDDDSQAGQGMLSHRIRLEEIEALLMQSGEQ
LEQQEAQLLTVKQQVQTEQHQQQLQLDLLKQQQTVLQQLDISIAKIQSTAQALKLQQQQL
HIQLQQFDLQLQEDAMQKDDLEIDLHALDLKLEQILPNYKAQQFQFEELTEQLESMQQNL
QHAQQELDLIRRQAMQTKQQIELLEKDASFLKVQYQQIITQIEQSKKFVDPIQLELPNLE
SQFSQQQQLTENLEKSWHKWQVELNQVQEKQQQLTEQRYRFQQQDESLRTELEEKRLAWQ
AAKSDFLHYTEQLKELNSEPVLGLKIDLSGHQQQLEKIQQKFEKIGAVNLAASQEYDEVS
QRFEELSHQMRDLENTVEQLKNAMKSIDQETRKLFMSTFDQVNAELQVLFPKVFNGGEAS
LSLEDDWQSGIKLMARPPGKRNSSLALLSGGEKALTALALVFAIFRLNPAPFCVLDEVDA
PLDDANVQRFCNLVKELSEQVQFIYITHNKIAMTMATDLLGVTMPEPGTSKLVTVNLEQA
KEYGLVAEA