Protein Info for MPMX26_02403 in Acinetobacter radioresistens SK82

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 transmembrane" amino acids 1105 to 1126 (22 residues), see Phobius details PF13476: AAA_23" amino acids 5 to 251 (247 residues), 87.8 bits, see alignment E=2.5e-28 PF13555: AAA_29" amino acids 26 to 55 (30 residues), 27.4 bits, see alignment (E = 3.5e-10) PF13558: SbcC_Walker_B" amino acids 1104 to 1158 (55 residues), 34 bits, see alignment 4.4e-12

Best Hits

Predicted SEED Role

"Exonuclease SbcC" in subsystem DNA repair, bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1200 amino acids)

>MPMX26_02403 hypothetical protein (Acinetobacter radioresistens SK82)
MKIVRLKLQNLASLAGEQEINFEADPLQHAGLIAITGATGAGKSTLLDAMCLALFNKIPR
LKTHEGKLKDVSGQDVQIDSTLNILRRGTAHAYSELEFIAQNQKRYIARWELKRARGHAE
GKLQAVQRALVCVTDGNMLTDKAKECDKQVLELIGLSFEQFTRAVLLAQSEVGAFLKAKD
NERADLLEYLTNSNIFSLVGKAAFERTKMVRVQREKLNELIGHVELLSTEQMAQLEDQYK
ARQQQVQQLEQHRQILRNELQWHKSHDLLYTQIQAKQEFYQVQLDANQKLGEQRQRLQQL
EQFASIRPILLQQKRCEQQLQNLEKQISQHQQLFQQVCEQYQAAQKSCQAARTAVENEKL
RQNQLAPYLNQAKQFLDQRKLIESQYTQVRNKLKEKTAEQQQQLEQLQQAQQQYQQLENI
QQQLQQQLAQSQQLCGFDSEPQASLQHLKAYIAQAQQASELYTQDQIIHLQIQQDSIEQQ
LHKLVQHAGDANQLEQKLRDLYQQREQQLERIYQFEQLQHQLERWQIHYIEHQSLDQNIH
QLKSEIQELHNAMLEQQSAYEHDKKERELLQKQLQQQRLLFSENIEQLRAALQPDEPCMV
CGSQQHPYREQQHLLEKSLLAIQEQQEKNYLQKEQEAQNQWLAARQQYLKQETVLSHLQQ
QQQYSLEQIQQLQQQLQHKYSFSGLELLWEQPPEQLLLKLGELQQVQLKVREQLDFNITE
TQKTQSQYNELVRQLEKLRAQCIRAQQLQQLATPILKKLPSSQHSDWHDNSLQEAQHIYQ
VFQNRLLQLEQLNTHKGSVEQLNLKLQPQQLQYQYLNTQIVQLEQELEQLKQQGLDNVTQ
VKELTLKVAGQTYEQAQHWLDDLTQQLSILEQSCLEKQQYFEGLQQNYQQQQSKISQFQA
TRQHVQQEYTNIYAQVQHWLNDHPDYSPELIEFLVLQDATEEQRIRQLIQANDRGLSEAK
TALNTLQEQFEQHLATKPAHEFEQLQNLLENLEIQLEHTYQERDQLRTKLEIQQHNLHKQ
QQFQKQIVQVQQEEYRWSRISELIGSADGARFKKLAQEHHLDILVEYANQQLQPLAPRYQ
LQRIEDSLGLAIIDHHMNGEVRPVLSLSGGETFLVSLALALAIANMASGSMKIESLFIDE
GFGTLDPASLHVVMDALDRLQGQGRKVTLISHVQEMHERIPIQIQVKAVGSGASRIQIVG