Protein Info for MPMX26_02339 in Acinetobacter radioresistens SK82

Annotation: ABC transporter ATP-binding protein YtrE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 248 PF00005: ABC_tran" amino acids 35 to 184 (150 residues), 113.4 bits, see alignment E=1.3e-36

Best Hits

Swiss-Prot: 48% identical to LOLD_FRATT: Lipoprotein-releasing system ATP-binding protein LolD (lolD) from Francisella tularensis subsp. tularensis (strain SCHU S4 / Schu 4)

KEGG orthology group: K02003, (no description) (inferred from 73% identity to acd:AOLE_14410)

Predicted SEED Role

"Lipoprotein releasing system ATP-binding protein LolD"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (248 amino acids)

>MPMX26_02339 ABC transporter ATP-binding protein YtrE (Acinetobacter radioresistens SK82)
MTQANLRSSIMPQPIISAQQITQSIQLPHQNLTILKEVNLQIMPGEQVAITGRSGSGKST
LLGILATLDQASSGELIICEEEVHRLNEEQRAQVRLKYIGFIFQSFQLLPALTAVENVML
PLRLQPDFHYQTAEQKALKLLKRVGLERQAGQTPKVLSGGEQQRVAIARALISEAAIIFA
DEPTGNLDGQTAEEIEQLLFELNHELGTTLVLVTHDPELARQCQRHFELVNGHLIEKTSG
DTHVKSGA