Protein Info for MPMX26_02270 in Acinetobacter radioresistens SK82

Annotation: putative ABC transporter ATP-binding protein YejF

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 531 PF00005: ABC_tran" amino acids 33 to 189 (157 residues), 103.7 bits, see alignment E=4.8e-33 amino acids 305 to 454 (150 residues), 106.9 bits, see alignment E=4.7e-34 PF13304: AAA_21" amino acids 82 to 224 (143 residues), 29.1 bits, see alignment E=3.4e-10

Best Hits

KEGG orthology group: K13896, microcin C transport system ATP-binding protein (inferred from 68% identity to aci:ACIAD1142)

Predicted SEED Role

"Oligopeptide transport ATP-binding protein OppF (TC 3.A.1.5.1)" in subsystem ABC transporter oligopeptide (TC 3.A.1.5.1) (TC 3.A.1.5.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (531 amino acids)

>MPMX26_02270 putative ABC transporter ATP-binding protein YejF (Acinetobacter radioresistens SK82)
MHLTQDASDQSAALKLQVEQLNIQNEQGEVLVENLNFYLYAGQTLAIVGESGSGKSISSL
ALLGLLPANLKVQGSAILDSQNLLNLSETAKRQIRGHKIAMIFQEPMTALNPLHRVEKII
GESLYLQGWSKDQVRQRVVELLHDVGITHPEDKLQRYPHELSGGQRQRVMIAMALALDPD
ILIADEPTTALDVTLQAQILKLLQSLQHRRNMAMILISHDLNIVKRCAQQVVVMNQGRVE
EQGSAEQIFKQPKAEYTRHLLAHNFGQALPSSAGSELLRLEQVSVCFPIRQGLLNRVKDY
FVAVEPLNLVLRQGDSIGIVGESGSGKTSLALAIARLIESKGQIFLMEQDLNLLSEKKLR
LLRTDFQIVFQDPFSSLNPRMTVEQIIGEGLNLKHHMPLAVTEQIDQILQTVELPVHFKQ
RYPHELSGGQRQRVALARALILKPKLIILDEPTSALDRTTQRAIVQLLRNLQQEYQLSYL
FISHDLQVVRALCQQVMVLRHAQLVEFQDTEQLFSNPQSEYTRQLIAASQY