Protein Info for MPMX26_02213 in Acinetobacter radioresistens SK82

Annotation: Lipoprotein-releasing system transmembrane protein LolE

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 411 transmembrane" amino acids 21 to 48 (28 residues), see Phobius details amino acids 188 to 207 (20 residues), see Phobius details amino acids 270 to 295 (26 residues), see Phobius details amino acids 316 to 342 (27 residues), see Phobius details amino acids 347 to 365 (19 residues), see Phobius details amino acids 377 to 397 (21 residues), see Phobius details TIGR02212: lipoprotein releasing system, transmembrane protein, LolC/E family" amino acids 4 to 411 (408 residues), 508.5 bits, see alignment E=7e-157 PF12704: MacB_PCD" amino acids 28 to 241 (214 residues), 53.8 bits, see alignment E=3.2e-18 PF02687: FtsX" amino acids 273 to 404 (132 residues), 65.7 bits, see alignment E=3.8e-22

Best Hits

Swiss-Prot: 46% identical to LOLC_XYLFT: Lipoprotein-releasing system transmembrane protein LolC (lolC) from Xylella fastidiosa (strain Temecula1 / ATCC 700964)

KEGG orthology group: K09808, lipoprotein-releasing system permease protein (inferred from 91% identity to aci:ACIAD2641)

MetaCyc: 38% identical to lipoprotein release complex - inner membrane subunit (Escherichia coli K-12 substr. MG1655)
RXN-22427

Predicted SEED Role

"Lipoprotein releasing system transmembrane protein LolE"

MetaCyc Pathways

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (411 amino acids)

>MPMX26_02213 Lipoprotein-releasing system transmembrane protein LolE (Acinetobacter radioresistens SK82)
MFKPISLYIGLRYTRARRSNHFISFIALVSMIGLTLGVAVLITVLSVMNGFDRELKNRVL
GMIPQATVSSTQILTDWPELAKKVESHEHVTGAAPFTQLQGMLTAQGQVAGLMVTGIEPQ
YEKKVSIIQDHMVEGSIDSLKKGEFGIVLGKQMTDALGLGLNDSVTLVLPEATPSPAGVV
PRFKRFKIVGIFSIGAEVDSMMGYIALNDASTLLRLPDGAQGVRLKLDDIFSAPQVASSI
ARELPGNFYASDWTYTHGNLFSAIQMEKAMVSLLLFLIVLVAAFNIVSSLVMVVTDKKSD
IAILRTLGASPATITRIFMVQGTVIGVIGTVSGAILGIIFASSISSFISWLNNAFGLHLF
DAYFINYLPSYLRWQDVVVIVSLSLILSFLATIYPALRAAKIQPAEALRYE