Protein Info for MPMX26_02153 in Acinetobacter radioresistens SK82

Annotation: DNA repair protein RecO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 236 PF11967: RecO_N" amino acids 1 to 44 (44 residues), 30.5 bits, see alignment 3e-11 PF02565: RecO_C" amino acids 76 to 226 (151 residues), 65 bits, see alignment E=7.4e-22

Best Hits

KEGG orthology group: K03584, DNA repair protein RecO (recombination protein O) (inferred from 73% identity to acd:AOLE_04580)

Predicted SEED Role

"DNA recombination and repair protein RecO" in subsystem DNA repair, bacterial RecFOR pathway

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (236 amino acids)

>MPMX26_02153 DNA repair protein RecO (Acinetobacter radioresistens SK82)
MRNEALHGYLIHYRKYREKSHLVYLFTEEYGRIDGILRQVPPPQYQSLALQASGKGELKN
FSKLEIVNQPIFFYGDAFFSGFYLNELLLRLCPLEEAMPQTYQQYQLTLVKLQQLAVNTQ
PGLLLRQILRQFEHILLEELGYAIDFSVDAHQQPVEPERHYHFQIQEGFIPVQKASSATL
AGQSLLTMLDYEKGADFSQPQLQLLSRLYRQMITSLLGDRPLKSRQLWIQNTHSQS