Protein Info for MPMX26_02103 in Acinetobacter radioresistens SK82

Annotation: putative ABC transporter ATP-binding protein YadG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 311 PF00005: ABC_tran" amino acids 21 to 165 (145 residues), 117.4 bits, see alignment E=7.6e-38 PF13304: AAA_21" amino acids 132 to 194 (63 residues), 29.3 bits, see alignment E=8.6e-11

Best Hits

KEGG orthology group: K09687, antibiotic transport system ATP-binding protein (inferred from 90% identity to acd:AOLE_05470)

Predicted SEED Role

"ABC-type multidrug transport system, ATPase component"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (311 amino acids)

>MPMX26_02103 putative ABC transporter ATP-binding protein YadG (Acinetobacter radioresistens SK82)
MTDALTLRDLSKTYRNGFQALKGINLTVPEGEFYALLGPNGAGKSTTISIISSLAKKTSG
TVEIFGYNLDTHPSEAKQCLGVVPQEFNFGHFEKTFDILVTQAGYYGIPKKLAEQRAEQY
LEKLGLWDKRHVQARMLSGGMKRRLMIARAMMHEPKLLILDEPTAGVDIELRRSMWDFLT
EMNAKGTSIILTTHYLEEAEMLCRRIAIIDRGVIKEDTTMKDFLNQLNEESFIFDLAEPI
EPLHLNIIGVNFNLIDPMTLEVTMDKAHSLNDLFQLMQAQNIQVRSMRNKSNRLEELFVK
MVEKNLDGATT