Protein Info for MPMX26_02008 in Acinetobacter radioresistens SK82

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1285 transmembrane" amino acids 498 to 522 (25 residues), see Phobius details TIGR01967: RNA helicase HrpA" amino acids 26 to 1280 (1255 residues), 1393.1 bits, see alignment E=0 PF00270: DEAD" amino acids 65 to 216 (152 residues), 32.9 bits, see alignment E=1.6e-11 PF00271: Helicase_C" amino acids 289 to 403 (115 residues), 40.4 bits, see alignment E=9.2e-14 PF04408: WHD_HA2" amino acids 467 to 494 (28 residues), 22.8 bits, see alignment (E = 2.4e-08) PF21010: HA2_C" amino acids 495 to 552 (58 residues), 36.4 bits, see alignment (E = 1.8e-12) PF07717: OB_NTP_bind" amino acids 619 to 694 (76 residues), 57.6 bits, see alignment 3.7e-19 PF11898: DUF3418" amino acids 709 to 1280 (572 residues), 475.5 bits, see alignment E=8.3e-146

Best Hits

KEGG orthology group: K03578, ATP-dependent helicase HrpA [EC: 3.6.4.13] (inferred from 85% identity to abc:ACICU_01184)

Predicted SEED Role

"ATP-dependent RNA helicase HrpA (EC 3.6.4.13)" (EC 3.6.4.13)

Isozymes

Compare fitness of predicted isozymes for: 3.6.4.13

Use Curated BLAST to search for 3.6.4.13

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1285 amino acids)

>MPMX26_02008 hypothetical protein (Acinetobacter radioresistens SK82)
MLSHLNVDQLVMARDSYRLNRLGKGKDANPKQYQELFEKSNAKVRARVERLPNIKLNQDL
PVTQYADKLIEAIQTHQVIIVAGETGSGKTTQLPQIAMLAGRGLTGMIGHTQPRRLAARS
VSQRIAEEVGEKLGESIGFKVRFNEQGSQDSIVRLMTDGILLAELTHDRYLTKYDTIIID
EAHERSLNIDFIMGYLKQLIKKRPDLKVIITSATLDVNRFSHYFNGAPVYEVEGRSFPVE
VRYRPISDLNIAGSDDDEFDDFEENLPRAVVQAVEECFKDAEEKGHPEHADILIFSSTEQ
EIRELQETLEKHGPRHTEILPLFARLGLGEQQKIFNPGGKGRRIIIATNVAETALTVPNI
RYVIDSGFARISRYSYRSRVQRLPIEAISQAAANQRKGRCGRIAPGVCIRLYSEEDFLSR
PEFTEPEIKRTNLASVILQMQSLGLGNLENFDFIEPPDHRLVNDGRKLLIELGALNEKKA
ELTKIGQMMARMPIDPRLARMILGGAHFGALNEALIIVSALAVQDPRERPADKQTQADQK
HALFKEADSDFLFYLKLWSTLKGNKDNQLSENKRRAFARQHFLSWLRLREWKQTYKQLVE
LAEGLKLSFNDKPASYENLHRALLTGLLSFIANKTDEKNVYMAVRQQKARIFPASVLHKA
GASWVMAFEMVETSQVYLRTLAKIEPEWILLAARDLLKHHYFEPHWSKKTGIVNAYDQIS
LFGLIIEPKRLTNFEKVDQAAAHEIFLRDALTTGNLGIIPPFLKHNLLKLEEVERVEDKL
RRRDLVVDEETVYQFYASKIPSEIASRRSFEDWLATVEAKEPRFLYVDEESLWLNDRPTT
QQFPDYLQNGQLRLAASYRFDPSHDEDGATVKIPLQALAQVNEEIWSWGIPGWRQELVEA
LLKSLPKDKRRNLVPIPDTARKLLREVQDKDLQRHVLNYLTFALRGEQITEKDFSVERID
QYLIPFIKVTDEKGRVIEKGRDLAELKARCRQETQRPVKQLKGEYKTFPESFIFEATQKV
TGVVIKQYQALVPVKSFSEIEAKDESGVVIQSFNDQAEAIKQHREGVIRLIHMQLGDLIR
QLKKQLGKPLALAYSPLGDRAKLEQMLVYATLQMALTELPVNAEEFQNVLAEVKGNFLSY
GQQALAALSDIFIQWQDIRRKLLVLDPEIFGRSIDDIEDQLDLMQLGDFVYTQPPEVWAE
FPRYLKALVLRLERLPNNLQRDEAAIAQVDPWMDKLFSVRNNPKSIDFYFMLEELRISLF
SQPMKTKIPVSATRLQKLWDRLGIS