Protein Info for MPMX26_02006 in Acinetobacter radioresistens SK82

Annotation: HTH-type transcriptional regulatory protein GabR

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 495 PF00392: GntR" amino acids 21 to 84 (64 residues), 49.7 bits, see alignment E=2.4e-17 PF00155: Aminotran_1_2" amino acids 164 to 456 (293 residues), 88.7 bits, see alignment E=4.7e-29

Best Hits

KEGG orthology group: K00375, GntR family transcriptional regulator / MocR family aminotransferase (inferred from 71% identity to abb:ABBFA_000199)

Predicted SEED Role

"Transcriptional regulator GabR of GABA utilization (GntR family with aminotransferase-like domain)" in subsystem Threonine degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (495 amino acids)

>MPMX26_02006 HTH-type transcriptional regulatory protein GabR (Acinetobacter radioresistens SK82)
MLSLLGDHLLQRLQKQTEGALYHRVFCCLRDAITEGILPPKTRLPASRDLAHELKVSRNT
ILNAYEHLQAQGYIQAHTGRGSWVAENLPESYLTVPGHEHLAEQPNQQQLKHLSKRGTAF
LESAAASPYQWGAFVPGAPDVTEFPHAEFGRILNRLSRQPEISRLIYSNDGGCLELKQAL
ADYLRVARSVRCEADQILITEGIHQAVDLVSRSLCDAGDQVWIEDPGYWGARNILRINGL
CINPVPVDHEGLIPDHTSSVPKLIFVTPSHQYPLGSHLSVSRRRQLLDLARYHGSWIIED
DYDSEFRFSGQPFPSLQGLEENTPVIYMGTFSKTIYPALRIGYMVIPKSLVESLKTVAAE
LYRGGHLLTQRALAEFIQEGHYAAHIRRMRILYGKRRAFLIELIERYLGTEFIHEFSHAA
GLHLVLKLPEHSDDVAIARMALSRGVKVRPLSRYYSDATRSQAGLLLGFACVKEKDMLVA
FSVLRQCLKEHQIAL