Protein Info for MPMX26_01977 in Acinetobacter radioresistens SK82

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 855 PF13185: GAF_2" amino acids 25 to 166 (142 residues), 37.8 bits, see alignment E=9.6e-13 PF01590: GAF" amino acids 75 to 165 (91 residues), 24 bits, see alignment E=2.2e-08 TIGR00229: PAS domain S-box protein" amino acids 179 to 298 (120 residues), 73.9 bits, see alignment E=1.2e-24 amino acids 297 to 415 (119 residues), 70.7 bits, see alignment E=1.3e-23 PF13426: PAS_9" amino acids 189 to 289 (101 residues), 40.8 bits, see alignment E=1e-13 amino acids 309 to 414 (106 residues), 75.2 bits, see alignment E=2e-24 PF08448: PAS_4" amino acids 189 to 292 (104 residues), 57.6 bits, see alignment E=6.5e-19 amino acids 306 to 416 (111 residues), 44.8 bits, see alignment E=5.9e-15 PF00989: PAS" amino acids 189 to 288 (100 residues), 29.3 bits, see alignment E=3.4e-10 amino acids 301 to 412 (112 residues), 54.3 bits, see alignment E=5.9e-18 PF08447: PAS_3" amino acids 207 to 284 (78 residues), 26.9 bits, see alignment E=2.2e-09 amino acids 323 to 408 (86 residues), 44.5 bits, see alignment E=7.1e-15 PF13188: PAS_8" amino acids 305 to 347 (43 residues), 34.2 bits, see alignment 7.4e-12 TIGR00254: diguanylate cyclase (GGDEF) domain" amino acids 424 to 584 (161 residues), 119.4 bits, see alignment E=1.3e-38 PF00990: GGDEF" amino acids 427 to 582 (156 residues), 135.8 bits, see alignment E=5.6e-43 PF00563: EAL" amino acids 606 to 840 (235 residues), 245.6 bits, see alignment E=2.1e-76

Best Hits

Predicted SEED Role

"diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s)" in subsystem Bacterial hemoglobins

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (855 amino acids)

>MPMX26_01977 hypothetical protein (Acinetobacter radioresistens SK82)
MNNNCDDHDTYYIFNLIGQHTELHLILSAASTWLESRISNVLVAIMLYSEQEQILKFTSG
KQNFSKQYGETIDNINIAPDERTCGRAAYLRKMVVSENLLKDIYWTPYQASIKLEKLYTC
WSTPILSARGTLYGTFATYYRTLRKPTDHNIKLLKQAAAMVALAIELDLERKQRIAISEK
YSSFYTYHPDAIFEIDTQGIMVSTNIASRKIIGFSDEQIRGKHYSSFLPAEYRDIADKAF
KEAMQGNAQYYEIPAYHASGEMIWLDLTNLPIKQNHQVTGVFGIARDITLRRKNQEHLRL
LKRGVNASPNGIIITDATAERKIVYVNPAFLHMTGYTEEDVMGKTCHFLQGPETEAEKIA
LVQQALKEHKEIQVTVKNYRKDGSWFWNRLMLGPVFDEAGRCTHFLGIQEDITQQRIHED
YITHQHSHDHLTGLANRQTFETNLQQAFETQHHSSKPLFLCYIDLDDFKPLNDSLGHLIG
DQIIKSVSDRLQALLQTGDFLGRFAGDEFALLMVNRNKRSEVITTAEEILKLFTQPFQID
EHKIHLSASIGIVADDCSIQRSSELLYHAVLAMKEAKRQGRNTWHWYEEANKKVMPEIDY
AHLRLELMEALNDNQFNLFYQPLINPATGLAKGVEALIRWNHPQRGYIFPDIFIPLAERT
GQIVAIGQWVLKKACMDIAEWNKTHQSQLTVSVNISPLQFRRAGFLQELEHALDISTLTP
ELLKIEVTEGMVIIGADRAIEILKSIRELGVQVSIDDFGTGYSSLSYLRRLPINQIKLDR
SFIEHLTESDQDAAIVQSIIHLAHQLNLEVVAEGVETLKQAAFLYQQGCDLLQGYFYARP
APITELKTIYISSLG