Protein Info for MPMX26_01962 in Acinetobacter radioresistens SK82

Annotation: Leukotoxin export ATP-binding protein LtxB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 714 transmembrane" amino acids 161 to 183 (23 residues), see Phobius details amino acids 195 to 215 (21 residues), see Phobius details amino acids 267 to 291 (25 residues), see Phobius details amino acids 297 to 314 (18 residues), see Phobius details amino acids 389 to 405 (17 residues), see Phobius details amino acids 410 to 432 (23 residues), see Phobius details TIGR03375: type I secretion system ATPase" amino acids 8 to 700 (693 residues), 848.7 bits, see alignment E=1.7e-259 PF00664: ABC_membrane" amino acids 161 to 424 (264 residues), 108.8 bits, see alignment E=4e-35 PF00005: ABC_tran" amino acids 495 to 640 (146 residues), 103.7 bits, see alignment E=1.3e-33

Best Hits

KEGG orthology group: K06148, ATP-binding cassette, subfamily C, bacterial (inferred from 82% identity to abc:ACICU_01231)

Predicted SEED Role

"Type I secretion system ATPase, LssB family LapB"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (714 amino acids)

>MPMX26_01962 Leukotoxin export ATP-binding protein LtxB (Acinetobacter radioresistens SK82)
MSTKINYQPWLQGVMTVARHYRIETSEERIRLQLDWNQIQTLDEVLLLMTRRVGLNLRKS
KFTPDILNPWRLPVLVEFQNGQVGVIDKADTAGNVSIQLSGDQGLAQSFKVDELQPVIKT
VYILRPESSVPDARIDEYIKPYEANWFWSIVLKDWKRYIDIMFASLMANILALATIIFSM
QVYDRVVPSQSIPTLWVLAGGVLIAAIFEFIMRVARVYLSDIIGKRADLKVSDRVFGHAL
RIKNSERSKSTGTFISQIRELEGVRELVTSTTISTIADLPFFFLFLVIFWIIGGNLFWVM
LLVVPLMIIPGILAQKPLAKLAQEGMRESSIRNAILVEAVQGIEDIKLLRAESRFQNQWN
HMNEVSADISMKQRKIVGVMTAWTQKIQGLTYAIVVLVGAFAVMEGDMTTGALVACSILS
SRMLAPISQITGVLGRLQQAKVAKQSLDELMKKPVDQPERASLIHRPVLYGNYELNGTVF
KYGEDDPKPSLMIPKLSIREGEKIAILGRNGAGKTTLLQLLAGMQVPLQGNIDLDGLDLN
LIDPSDVRRDVALLNQNAHLFYGTIRENLTLGAPLASDEDVLKALAITGALHFIKEKKEG
LDHIILEGGIGFSGGQRQALLLARLLIRQPNILLLDEPTASIDDVSEKQLIDHLKGWLSH
RTLIVATHRRAVLELVDRIIIINEDRIMMDGPRDQILQQTVAAQPHKTIQGGQA