Protein Info for MPMX26_01755 in Acinetobacter radioresistens SK82

Annotation: Inner membrane protein YdcO

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 transmembrane" amino acids 12 to 36 (25 residues), see Phobius details amino acids 48 to 66 (19 residues), see Phobius details amino acids 73 to 91 (19 residues), see Phobius details amino acids 97 to 116 (20 residues), see Phobius details amino acids 126 to 164 (39 residues), see Phobius details amino acids 171 to 190 (20 residues), see Phobius details amino acids 211 to 233 (23 residues), see Phobius details amino acids 255 to 279 (25 residues), see Phobius details amino acids 291 to 314 (24 residues), see Phobius details amino acids 321 to 343 (23 residues), see Phobius details amino acids 363 to 385 (23 residues), see Phobius details TIGR00843: benzoate transporter" amino acids 8 to 384 (377 residues), 358.6 bits, see alignment E=2.1e-111 PF03594: BenE" amino acids 8 to 382 (375 residues), 407.4 bits, see alignment E=2.9e-126

Best Hits

KEGG orthology group: K05782, benzoate membrane transport protein (inferred from 79% identity to abb:ABBFA_001409)

Predicted SEED Role

"Benzoate transport protein" in subsystem Benzoate degradation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (394 amino acids)

>MPMX26_01755 Inner membrane protein YdcO (Acinetobacter radioresistens SK82)
MMQKLLEDISIPAIFAGFITFLVGISVSAVLVIQAAQILGATSEQISSWFWALGLGIGIS
GLFLSWKFKYPVATSWSTAGLALIIATGSGYTLYEAIGAFFICGLLTAILGFSGVFKKAL
SYIPQSLTSAMLAGVLLKFGIALFASLQTNWGFILSILAIYILSKRIWPRYSIVLTVIGG
IAVCPLFMEFHTPVVQWSLAQPVWMAPEFSWSSILGLAFPLFVINMASQYLPGIAMIQSY
GYKPHINQLIGWTGVSQTLLAPFGCYSVNIAAISAAISLDDQVHPDPAKRYIAGMSCGFF
YILVGLFAATLTSLLMSFPQVFITALAGIALFGTIGHNIALAFHDIEEREATLMTFLFSA
SGVQFLGIGSAFWGLIFGIIVMLVFKFKTKIKAT