Protein Info for MPMX26_01590 in Acinetobacter radioresistens SK82

Annotation: Putative metabolite transport protein YjhB

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 423 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 55 to 78 (24 residues), see Phobius details amino acids 86 to 105 (20 residues), see Phobius details amino acids 114 to 133 (20 residues), see Phobius details amino acids 145 to 169 (25 residues), see Phobius details amino acids 175 to 194 (20 residues), see Phobius details amino acids 238 to 255 (18 residues), see Phobius details amino acids 275 to 296 (22 residues), see Phobius details amino acids 303 to 322 (20 residues), see Phobius details amino acids 328 to 347 (20 residues), see Phobius details amino acids 365 to 385 (21 residues), see Phobius details amino acids 391 to 412 (22 residues), see Phobius details PF07690: MFS_1" amino acids 26 to 364 (339 residues), 189.7 bits, see alignment E=1.1e-59 amino acids 266 to 415 (150 residues), 62.2 bits, see alignment E=6.6e-21 PF00083: Sugar_tr" amino acids 43 to 405 (363 residues), 109.5 bits, see alignment E=2.9e-35

Best Hits

Swiss-Prot: 66% identical to MUCK_ACIAD: Cis,cis-muconate transport protein (mucK) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

KEGG orthology group: K08196, MFS transporter, AAHS family, cis,cis-muconate transporter (inferred from 66% identity to abn:AB57_1574)

Predicted SEED Role

"Sialic acid transporter (permease) NanT" in subsystem Sialic Acid Metabolism

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (423 amino acids)

>MPMX26_01590 Putative metabolite transport protein YjhB (Acinetobacter radioresistens SK82)
MMDQAVQKTDNTTNAKVWKFAFIFSFLALLVDGADIAFLSYSLTSLKTEFGLSSIQAGAL
GSWTLAGMAIGGFFGGWACDRFGRVRVIVIAITLFSLLTCWLGFAQSYQQFVTLRFISAI
GLGALYIACNTLMAEYVPTKYRSTVLAALMTGWTLGSIVATVLAGWLIPEFGWRMLFYIS
IIPIVLAVAMHFLVPEPQSWKDARAQRLTTTTSVDQSQPKPKGAFKTIFADVMNRRMFIL
WSFSTAFLQFGYYGVSNWLPAYLESDLGIKFKEMTMYMIGTFFIMICTKIIAGYIADRIG
RRAVFAFGTMGTAIFIPIIVFGNTPDNILWLMLLFGFLYGIPYGINATYMTESFPTKVRG
TAVGGAYNIGRLGAVLAPVTIGYFAQGGSIGTGLLIMGVAYFLCGLIPALFIKDRLYNPQ
KAE