Protein Info for MPMX26_01489 in Acinetobacter radioresistens SK82

Annotation: Miniconductance mechanosensitive channel YbdG

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 428 transmembrane" amino acids 33 to 55 (23 residues), see Phobius details amino acids 83 to 102 (20 residues), see Phobius details amino acids 114 to 136 (23 residues), see Phobius details amino acids 153 to 172 (20 residues), see Phobius details amino acids 178 to 204 (27 residues), see Phobius details PF00924: MS_channel_2nd" amino acids 196 to 264 (69 residues), 57.5 bits, see alignment E=1.2e-19 PF21082: MS_channel_3rd" amino acids 345 to 406 (62 residues), 21.6 bits, see alignment E=2.4e-08

Best Hits

KEGG orthology group: None (inferred from 82% identity to aci:ACIAD1869)

Predicted SEED Role

"Small-conductance mechanosensitive channel"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (428 amino acids)

>MPMX26_01489 Miniconductance mechanosensitive channel YbdG (Acinetobacter radioresistens SK82)
MELIIIVGVNGLEQLAFIQNIQDWSDQFPWLEMLTSLGILILLAALANFIAKQVVVRGLR
KLISKMKFTNSSIFAEHSVIRRIANIVPAIVIMNGITTVPHLSLKLVTFVQMGAQAFIFL
TLALALSELLNIFNLIYQRNPKSKNKPIKGYLQLVKLMLYIVCALMILGTFLKKDVFTLL
AGFGAMATVLMLVFQNTILSLVASVQISSYDMVRIGDWIEMPSLNADGDVIDMSLHTVTV
QNFDKTFTTIPTNKLITDTFKNWRGMSNAGVRRIKRAIYIDQSTVHFMTNEEQQKLKDFL
LLDQYLNIKESEIQKFNQQLGNQAIYNQRRLTNLGTFRAYIEFYLKQHPGIAQHQTIMVR
QLQPTSEGLPLEIYAFSNTTSWVDYEAIQSDIFDHLIAIIGEFGLQVYQAPSGQDWKVLS
NAEVIEHS