Protein Info for MPMX26_01480 in Acinetobacter radioresistens SK82

Annotation: putative HTH-type transcriptional regulator

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 342 transmembrane" amino acids 87 to 110 (24 residues), see Phobius details amino acids 146 to 161 (16 residues), see Phobius details PF12625: Arabinose_bd" amino acids 28 to 210 (183 residues), 72.9 bits, see alignment E=5.4e-24 PF12833: HTH_18" amino acids 262 to 338 (77 residues), 79.8 bits, see alignment E=2.3e-26 PF00165: HTH_AraC" amino acids 302 to 338 (37 residues), 36.7 bits, see alignment 5.1e-13

Best Hits

KEGG orthology group: None (inferred from 83% identity to acd:AOLE_10980)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (342 amino acids)

>MPMX26_01480 putative HTH-type transcriptional regulator (Acinetobacter radioresistens SK82)
MEIISSRQDVGIPGVYGLLLLDVVSRWGYSAETLFAPFHFSSEQLAHPDYRIPTPLANEL
IKHALKITGEQSLGYHLGTQMRISIHGFIGYAIMTASNISEALVLAARFIQLRMPFLQLY
FSTFGDKATLQLQCDIQLEPLRTEIILALTIGIISMAKAITGINNLEGEIDFDFAKPEGF
DRYLAKMPSHHFRFNQPHILSSFDKKFLGLQMVNADPIASQIAINQCEAELSALGERRRL
AMRVRDILTHSEQHYLSIESVADRLHMSDRTLKRQLAAEGTSFSSLVDEVRYRHATSLLS
RTDYTLEQIADELGYSDVANFSRAFKRWSGRSPSNWRKDPYL