Protein Info for MPMX26_01187 in Acinetobacter radioresistens SK82

Annotation: Outer membrane protein assembly factor BamA

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 918 signal peptide" amino acids 22 to 27 (6 residues), see Phobius details amino acids 44 to 44 (1 residues), see Phobius details transmembrane" amino acids 28 to 43 (16 residues), see Phobius details PF17243: POTRA_TamA_1" amino acids 261 to 329 (69 residues), 37.2 bits, see alignment 3.8e-13 PF01103: Omp85" amino acids 614 to 915 (302 residues), 129.5 bits, see alignment E=3.2e-41

Best Hits

KEGG orthology group: None (inferred from 63% identity to aci:ACIAD2403)

Predicted SEED Role

"Outer membrane protein assembly factor YaeT precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (918 amino acids)

>MPMX26_01187 Outer membrane protein assembly factor BamA (Acinetobacter radioresistens SK82)
MPAKINFKQSTLTRSIHRILKINHINKLVYTNVFLSIFTASVYAQEEPIPTYRPESKPVL
TSRSEAKGQPEDDQDEIAAAPSMTEQELQKVVEEKKEEITQDQSVNQDSLRLLEQQTDQD
TNSAFKPIEFEDLEEYPVEQIDQSMANEIYRVAEEAKSEAQAFRAGLNRAPETAIPEASQ
QELTAINQAPVNVDQLMQQIQSDRAIVAEINESGRTLAALDTGKTTPKDAEKPNIFKRAL
YRIRPPRDMSTAETVPRITATVEGAPPELAANIRGKLSSFTQESFEDFNSALPQLRSLSN
QAAQAVGYYNSTFRFDKVSDSRVRVYVQPNEPVRITEQDIEISGEGSEQPQFQVIELIPD
QDVGDIFHHGLYEETKRRITDAASNNGYFDAYWRLHDVKISQPQNTAEINLRYETGDRYS
LKKPVFQMSDPSKPFPLDDDILQSMVPWKEGDDYTSWRINTLANNLTNARYFNYTLVDAV
KPDPIEKPLELPPDIQTLLDQQQISEQTLTQDQQRNKSTSAQEVTQNVVDEKQFAGTQPD
IQQVSLAREQQQVQDEREAQQEQLREQARAERSIPVLITLNADSLNSVETGIGYGSDTGA
RLRTQYRRAIVNRRGHAFDSNLEVSKIRQALDGRYTIPYNHPTDDYINLVGGYEREERED
VGKGLNLDIESAVAGIDRIIKNPRGQWQHTFGARYRLDRLNQRGNIVSDSIPDAFQIPGS
NPEQQSLLFGYETSRLDSDARVNPTRGFRQTYKVELGSKTLLSDADMALVNAGWRFIYSL
GENNDHQFVGRADVGYIFTEDFDQVPYNIRYFTGGDQSIRGFDYKSLSPEVFGYKVGGQA
LATTSLEYNYQFKDGWRAAVFADAGNAYDKDFNTPTAYSAGLGIRWSSPVGPIRLDVAAG
LSDDNIPIRLHFFIGPQL