Protein Info for MPMX26_01157 in Acinetobacter radioresistens SK82

Annotation: 30S ribosomal protein S6

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 128 TIGR00166: ribosomal protein bS6" amino acids 1 to 93 (93 residues), 107.8 bits, see alignment E=1.3e-35 PF01250: Ribosomal_S6" amino acids 3 to 91 (89 residues), 98.5 bits, see alignment E=1e-32

Best Hits

Swiss-Prot: 94% identical to RS6_ACIAD: 30S ribosomal protein S6 (rpsF) from Acinetobacter baylyi (strain ATCC 33305 / BD413 / ADP1)

KEGG orthology group: K02990, small subunit ribosomal protein S6 (inferred from 94% identity to aci:ACIAD2430)

MetaCyc: 64% identical to 30S ribosomal subunit protein S6 (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"SSU ribosomal protein S6p" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (128 amino acids)

>MPMX26_01157 30S ribosomal protein S6 (Acinetobacter radioresistens SK82)
MRHYEIVLLVHPDQSDQVVGMVERYLTHIKEADGQIHRLEDWGRRQLAYPINKIHKAHYI
LMNVECGQTTLDELEELFRYNDAIIRNVIIRRENAITEESLLAKSAEEKRARKAQREEAQ
HNQDSVEA