Protein Info for MPMX26_01055 in Acinetobacter radioresistens SK82

Annotation: Murein hydrolase activator NlpD

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 273 signal peptide" amino acids 1 to 39 (39 residues), see Phobius details PF01476: LysM" amino acids 55 to 97 (43 residues), 52.3 bits, see alignment 4.4e-18 PF01551: Peptidase_M23" amino acids 173 to 266 (94 residues), 98.3 bits, see alignment E=2.5e-32

Best Hits

KEGG orthology group: K06194, lipoprotein NlpD (inferred from 69% identity to aci:ACIAD1229)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (273 amino acids)

>MPMX26_01055 Murein hydrolase activator NlpD (Acinetobacter radioresistens SK82)
MQLVPQHRLFPVPTTTIMKKIVLSVAVVSTLILTGCASKPQINNPTRYATAPDYYTVRSG
DTLSGIAARYGLSYLSIAEMNDISAPYRIYVNQSLRLKNSGTRRSQTQSMTQAAPIQRQR
VALPTPPPVTTTTRTTVQPTSPTPSIPVRSTTLRWVKPANGPVLQAYNPVSNIKGTRFSG
NLGDPVFAAADGQVVYAADGLKEYGNLVLIKHIDGYISAYAHNSKMLVKSGDNVTAGQKI
AEMGSSGTNQVMLEFQIRLDGKPINPASILPIN